Strain Fitness in Pantoea sp. MT58 around IAI47_19950

Experiment: Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_19950 and IAI47_19955 are separated by 422 nucleotides IAI47_19950: IAI47_19950 - SDR family oxidoreductase, at 217,108 to 218,217 _19950 IAI47_19955: IAI47_19955 - site-specific integrase, at 218,640 to 219,722 _19955 Position (kb) 217 218 219Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 216.109 kb on + strandat 216.109 kb on + strandat 216.110 kb on - strandat 216.110 kb on - strandat 216.120 kb on + strandat 216.120 kb on + strandat 216.120 kb on + strandat 216.120 kb on + strandat 216.121 kb on - strandat 216.121 kb on - strandat 216.121 kb on - strandat 216.124 kb on + strandat 216.124 kb on + strandat 216.124 kb on + strandat 216.124 kb on + strandat 216.125 kb on - strandat 216.210 kb on + strandat 216.211 kb on - strandat 216.239 kb on - strandat 216.255 kb on + strandat 216.255 kb on + strandat 216.256 kb on - strandat 216.386 kb on + strandat 216.387 kb on - strandat 216.387 kb on - strandat 216.427 kb on + strandat 216.427 kb on + strandat 216.427 kb on + strandat 216.428 kb on - strandat 216.434 kb on - strandat 216.562 kb on - strandat 216.570 kb on + strandat 216.690 kb on + strandat 216.842 kb on + strandat 216.847 kb on + strandat 216.847 kb on + strandat 216.848 kb on - strandat 216.922 kb on + strandat 216.922 kb on + strandat 216.922 kb on + strandat 216.922 kb on + strandat 216.924 kb on + strandat 216.924 kb on + strandat 216.937 kb on + strandat 216.981 kb on + strandat 217.003 kb on + strandat 217.003 kb on + strandat 217.003 kb on + strandat 217.004 kb on - strandat 217.066 kb on + strandat 217.066 kb on + strandat 217.069 kb on + strandat 217.134 kb on + strandat 217.135 kb on - strandat 217.135 kb on - strandat 217.172 kb on + strandat 217.245 kb on + strand, within IAI47_19950at 217.271 kb on + strand, within IAI47_19950at 217.272 kb on - strand, within IAI47_19950at 217.308 kb on + strand, within IAI47_19950at 217.316 kb on + strand, within IAI47_19950at 217.362 kb on + strand, within IAI47_19950at 217.363 kb on - strand, within IAI47_19950at 217.381 kb on - strand, within IAI47_19950at 217.381 kb on - strand, within IAI47_19950at 217.383 kb on + strand, within IAI47_19950at 217.384 kb on - strand, within IAI47_19950at 217.384 kb on - strand, within IAI47_19950at 217.422 kb on + strand, within IAI47_19950at 217.594 kb on + strand, within IAI47_19950at 217.594 kb on + strand, within IAI47_19950at 217.594 kb on + strand, within IAI47_19950at 217.595 kb on - strand, within IAI47_19950at 217.595 kb on - strand, within IAI47_19950at 217.595 kb on - strand, within IAI47_19950at 217.605 kb on + strand, within IAI47_19950at 217.752 kb on - strand, within IAI47_19950at 217.782 kb on + strand, within IAI47_19950at 217.782 kb on + strand, within IAI47_19950at 217.782 kb on + strand, within IAI47_19950at 217.783 kb on - strand, within IAI47_19950at 217.783 kb on - strand, within IAI47_19950at 217.783 kb on - strand, within IAI47_19950at 217.783 kb on - strand, within IAI47_19950at 217.783 kb on - strand, within IAI47_19950at 217.805 kb on - strand, within IAI47_19950at 217.851 kb on + strand, within IAI47_19950at 217.852 kb on - strand, within IAI47_19950at 217.866 kb on + strand, within IAI47_19950at 217.866 kb on + strand, within IAI47_19950at 217.866 kb on + strand, within IAI47_19950at 217.923 kb on + strand, within IAI47_19950at 217.923 kb on + strand, within IAI47_19950at 217.924 kb on - strand, within IAI47_19950at 217.924 kb on - strand, within IAI47_19950at 217.924 kb on - strand, within IAI47_19950at 217.957 kb on + strand, within IAI47_19950at 217.974 kb on + strand, within IAI47_19950at 217.974 kb on + strand, within IAI47_19950at 217.975 kb on - strand, within IAI47_19950at 218.004 kb on + strand, within IAI47_19950at 218.004 kb on + strand, within IAI47_19950at 218.005 kb on - strand, within IAI47_19950at 218.060 kb on - strand, within IAI47_19950at 218.060 kb on - strand, within IAI47_19950at 218.088 kb on - strand, within IAI47_19950at 218.088 kb on - strand, within IAI47_19950at 218.162 kb on + strandat 218.165 kb on + strandat 218.165 kb on + strandat 218.166 kb on - strandat 218.166 kb on - strandat 218.166 kb on - strandat 218.166 kb on - strandat 218.166 kb on - strandat 218.207 kb on - strandat 218.216 kb on - strandat 218.222 kb on + strandat 218.239 kb on + strandat 218.275 kb on + strandat 218.275 kb on + strandat 218.283 kb on + strandat 218.334 kb on - strandat 218.364 kb on + strandat 218.364 kb on + strandat 218.366 kb on + strandat 218.367 kb on - strandat 218.367 kb on - strandat 218.392 kb on + strandat 218.392 kb on + strandat 218.392 kb on + strandat 218.392 kb on + strandat 218.392 kb on + strandat 218.392 kb on + strandat 218.392 kb on + strandat 218.393 kb on - strandat 218.393 kb on - strandat 218.393 kb on - strandat 218.393 kb on - strandat 218.393 kb on - strandat 218.412 kb on + strandat 218.412 kb on + strandat 218.413 kb on - strandat 218.444 kb on + strandat 218.489 kb on + strandat 218.546 kb on + strandat 218.546 kb on + strandat 218.546 kb on + strandat 218.547 kb on - strandat 218.547 kb on - strandat 218.547 kb on - strandat 218.547 kb on - strandat 218.549 kb on + strandat 218.549 kb on + strandat 218.550 kb on - strandat 218.550 kb on - strandat 218.568 kb on - strandat 218.568 kb on - strandat 218.579 kb on - strandat 218.579 kb on - strandat 218.599 kb on + strandat 218.600 kb on - strandat 218.600 kb on - strandat 218.603 kb on + strandat 218.603 kb on + strandat 218.603 kb on + strandat 218.604 kb on - strandat 218.604 kb on - strandat 218.604 kb on - strandat 218.604 kb on - strandat 218.604 kb on - strandat 218.604 kb on - strandat 218.604 kb on - strandat 218.609 kb on + strandat 218.655 kb on + strandat 218.655 kb on + strandat 218.655 kb on + strandat 218.655 kb on + strandat 218.655 kb on + strandat 218.655 kb on + strandat 218.655 kb on + strandat 218.656 kb on - strandat 218.656 kb on - strandat 218.656 kb on - strandat 218.656 kb on - strandat 218.656 kb on - strandat 218.656 kb on - strandat 218.656 kb on - strandat 218.671 kb on + strandat 218.671 kb on + strandat 218.671 kb on + strandat 218.671 kb on + strandat 218.671 kb on + strandat 218.672 kb on - strandat 218.672 kb on - strandat 218.692 kb on + strandat 218.693 kb on - strandat 218.693 kb on - strandat 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.782 kb on + strand, within IAI47_19955at 218.783 kb on - strand, within IAI47_19955at 218.783 kb on - strand, within IAI47_19955at 218.783 kb on - strand, within IAI47_19955at 218.783 kb on - strand, within IAI47_19955at 218.783 kb on - strand, within IAI47_19955at 218.783 kb on - strand, within IAI47_19955at 218.786 kb on + strand, within IAI47_19955at 218.787 kb on - strand, within IAI47_19955at 218.879 kb on - strand, within IAI47_19955at 218.954 kb on + strand, within IAI47_19955at 218.988 kb on + strand, within IAI47_19955at 218.988 kb on + strand, within IAI47_19955at 219.118 kb on + strand, within IAI47_19955at 219.118 kb on + strand, within IAI47_19955at 219.185 kb on - strand, within IAI47_19955at 219.217 kb on + strand, within IAI47_19955

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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216,109 + -0.1
216,109 + +0.1
216,110 - -0.0
216,110 - -0.8
216,120 + +0.0
216,120 + -0.6
216,120 + +0.2
216,120 + +1.2
216,121 - +0.1
216,121 - -0.7
216,121 - +0.5
216,124 + +1.8
216,124 + -0.1
216,124 + -2.6
216,124 + +0.7
216,125 - +0.4
216,210 + +0.5
216,211 - -0.6
216,239 - -0.3
216,255 + -0.7
216,255 + -0.4
216,256 - -0.1
216,386 + +1.7
216,387 - +0.4
216,387 - +0.5
216,427 + +0.9
216,427 + +0.8
216,427 + -0.7
216,428 - +0.4
216,434 - +1.0
216,562 - +2.6
216,570 + -0.4
216,690 + -0.2
216,842 + +2.4
216,847 + +0.3
216,847 + +0.6
216,848 - -1.0
216,922 + +1.0
216,922 + +0.2
216,922 + +0.9
216,922 + +0.2
216,924 + +0.3
216,924 + +1.3
216,937 + +1.0
216,981 + +1.0
217,003 + +1.3
217,003 + +1.7
217,003 + -0.2
217,004 - -0.0
217,066 + -0.4
217,066 + +1.8
217,069 + +0.6
217,134 + +0.5
217,135 - -0.3
217,135 - -0.7
217,172 + +1.4
217,245 + IAI47_19950 0.12 -1.2
217,271 + IAI47_19950 0.15 +0.4
217,272 - IAI47_19950 0.15 +1.4
217,308 + IAI47_19950 0.18 -0.0
217,316 + IAI47_19950 0.19 +0.8
217,362 + IAI47_19950 0.23 +2.6
217,363 - IAI47_19950 0.23 -0.9
217,381 - IAI47_19950 0.25 -1.5
217,381 - IAI47_19950 0.25 -2.5
217,383 + IAI47_19950 0.25 -1.2
217,384 - IAI47_19950 0.25 -2.2
217,384 - IAI47_19950 0.25 -0.9
217,422 + IAI47_19950 0.28 +4.6
217,594 + IAI47_19950 0.44 +1.1
217,594 + IAI47_19950 0.44 +1.3
217,594 + IAI47_19950 0.44 +0.8
217,595 - IAI47_19950 0.44 +0.3
217,595 - IAI47_19950 0.44 -1.8
217,595 - IAI47_19950 0.44 -1.2
217,605 + IAI47_19950 0.45 +0.3
217,752 - IAI47_19950 0.58 -1.1
217,782 + IAI47_19950 0.61 -1.9
217,782 + IAI47_19950 0.61 -0.7
217,782 + IAI47_19950 0.61 +0.2
217,783 - IAI47_19950 0.61 -1.3
217,783 - IAI47_19950 0.61 -0.6
217,783 - IAI47_19950 0.61 -0.2
217,783 - IAI47_19950 0.61 -1.4
217,783 - IAI47_19950 0.61 +1.8
217,805 - IAI47_19950 0.63 +0.6
217,851 + IAI47_19950 0.67 -0.4
217,852 - IAI47_19950 0.67 -1.0
217,866 + IAI47_19950 0.68 +0.6
217,866 + IAI47_19950 0.68 -0.2
217,866 + IAI47_19950 0.68 -0.8
217,923 + IAI47_19950 0.73 +1.1
217,923 + IAI47_19950 0.73 +0.1
217,924 - IAI47_19950 0.74 +0.3
217,924 - IAI47_19950 0.74 -1.1
217,924 - IAI47_19950 0.74 -0.4
217,957 + IAI47_19950 0.76 -0.2
217,974 + IAI47_19950 0.78 -0.7
217,974 + IAI47_19950 0.78 -0.3
217,975 - IAI47_19950 0.78 -0.9
218,004 + IAI47_19950 0.81 +0.3
218,004 + IAI47_19950 0.81 -0.4
218,005 - IAI47_19950 0.81 -0.4
218,060 - IAI47_19950 0.86 +1.8
218,060 - IAI47_19950 0.86 -0.9
218,088 - IAI47_19950 0.88 -0.7
218,088 - IAI47_19950 0.88 -0.9
218,162 + -0.1
218,165 + -1.0
218,165 + +0.4
218,166 - -0.6
218,166 - -2.3
218,166 - -0.7
218,166 - -0.2
218,166 - -1.1
218,207 - -0.2
218,216 - -1.2
218,222 + +0.2
218,239 + -0.7
218,275 + +0.3
218,275 + +0.5
218,283 + +0.3
218,334 - -2.2
218,364 + -1.7
218,364 + -1.6
218,366 + -0.0
218,367 - -2.2
218,367 - -1.4
218,392 + -2.4
218,392 + +0.6
218,392 + -0.4
218,392 + -0.6
218,392 + +0.9
218,392 + -1.2
218,392 + -0.6
218,393 - -2.0
218,393 - -2.9
218,393 - +0.5
218,393 - -2.1
218,393 - +1.6
218,412 + -1.1
218,412 + +0.1
218,413 - -1.9
218,444 + -1.6
218,489 + +0.3
218,546 + +2.2
218,546 + +0.1
218,546 + -0.1
218,547 - -1.0
218,547 - -0.0
218,547 - -0.5
218,547 - +0.1
218,549 + -0.0
218,549 + -0.9
218,550 - -0.4
218,550 - -0.0
218,568 - +3.6
218,568 - +0.4
218,579 - +0.3
218,579 - +0.1
218,599 + -0.4
218,600 - +0.2
218,600 - -1.7
218,603 + +0.6
218,603 + +0.1
218,603 + -1.1
218,604 - +1.7
218,604 - +0.3
218,604 - +0.6
218,604 - +1.7
218,604 - +1.0
218,604 - +0.7
218,604 - -0.1
218,609 + +0.8
218,655 + +2.0
218,655 + +0.9
218,655 + -0.4
218,655 + +0.6
218,655 + +0.5
218,655 + -0.0
218,655 + -1.1
218,656 - -0.4
218,656 - -1.2
218,656 - -1.7
218,656 - +0.6
218,656 - -0.1
218,656 - +0.3
218,656 - +0.2
218,671 + +2.0
218,671 + +0.6
218,671 + -0.3
218,671 + -0.0
218,671 + +1.3
218,672 - -0.7
218,672 - -0.9
218,692 + +0.3
218,693 - +0.8
218,693 - -1.4
218,782 + IAI47_19955 0.13 -0.7
218,782 + IAI47_19955 0.13 +2.8
218,782 + IAI47_19955 0.13 -0.0
218,782 + IAI47_19955 0.13 +1.7
218,782 + IAI47_19955 0.13 +0.6
218,782 + IAI47_19955 0.13 -0.7
218,782 + IAI47_19955 0.13 -1.3
218,782 + IAI47_19955 0.13 -0.8
218,782 + IAI47_19955 0.13 +1.0
218,782 + IAI47_19955 0.13 +1.9
218,783 - IAI47_19955 0.13 -2.1
218,783 - IAI47_19955 0.13 -2.3
218,783 - IAI47_19955 0.13 -0.4
218,783 - IAI47_19955 0.13 -0.5
218,783 - IAI47_19955 0.13 +0.7
218,783 - IAI47_19955 0.13 -1.2
218,786 + IAI47_19955 0.13 +0.0
218,787 - IAI47_19955 0.14 -0.0
218,879 - IAI47_19955 0.22 -0.9
218,954 + IAI47_19955 0.29 -0.9
218,988 + IAI47_19955 0.32 +0.9
218,988 + IAI47_19955 0.32 -1.2
219,118 + IAI47_19955 0.44 +1.2
219,118 + IAI47_19955 0.44 +2.3
219,185 - IAI47_19955 0.50 -1.0
219,217 + IAI47_19955 0.53 +1.0

Or see this region's nucleotide sequence