Strain Fitness in Pantoea sp. MT58 around IAI47_13355

Experiment: Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_13350 and IAI47_13355 are separated by 918 nucleotidesIAI47_13355 and IAI47_13360 are separated by 307 nucleotides IAI47_13350: IAI47_13350 - suppressor of fused domain protein, at 2,825,102 to 2,826,211 _13350 IAI47_13355: IAI47_13355 - DMT family transporter, at 2,827,130 to 2,828,008 _13355 IAI47_13360: IAI47_13360 - DNA-binding transcriptional regulator DsdC, at 2,828,316 to 2,829,248 _13360 Position (kb) 2827 2828 2829Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2826.204 kb on + strandat 2826.204 kb on + strandat 2826.204 kb on + strandat 2826.205 kb on - strandat 2826.205 kb on - strandat 2826.205 kb on - strandat 2826.205 kb on - strandat 2826.205 kb on - strandat 2826.205 kb on - strandat 2826.211 kb on + strandat 2826.211 kb on + strandat 2826.211 kb on + strandat 2826.211 kb on + strandat 2826.212 kb on - strandat 2826.212 kb on - strandat 2826.212 kb on - strandat 2826.212 kb on - strandat 2826.212 kb on - strandat 2826.212 kb on - strandat 2826.212 kb on - strandat 2826.212 kb on - strandat 2826.212 kb on - strandat 2826.254 kb on + strandat 2826.254 kb on + strandat 2826.254 kb on + strandat 2826.279 kb on + strandat 2826.279 kb on + strandat 2826.292 kb on + strandat 2826.292 kb on + strandat 2826.292 kb on + strandat 2826.292 kb on + strandat 2826.293 kb on - strandat 2826.293 kb on - strandat 2826.293 kb on - strandat 2826.293 kb on - strandat 2826.293 kb on - strandat 2826.293 kb on - strandat 2826.293 kb on - strandat 2826.295 kb on + strandat 2826.295 kb on + strandat 2826.295 kb on + strandat 2826.295 kb on + strandat 2826.295 kb on + strandat 2826.295 kb on + strandat 2826.295 kb on + strandat 2826.295 kb on + strandat 2826.295 kb on + strandat 2826.323 kb on + strandat 2826.323 kb on + strandat 2826.323 kb on + strandat 2826.323 kb on + strandat 2826.324 kb on - strandat 2826.352 kb on + strandat 2826.367 kb on + strandat 2826.367 kb on + strandat 2826.422 kb on + strandat 2826.435 kb on + strandat 2826.435 kb on + strandat 2826.435 kb on + strandat 2826.436 kb on - strandat 2826.436 kb on - strandat 2826.436 kb on - strandat 2826.436 kb on - strandat 2826.468 kb on + strandat 2826.468 kb on + strandat 2826.468 kb on + strandat 2826.468 kb on + strandat 2826.469 kb on - strandat 2826.469 kb on - strandat 2826.476 kb on + strandat 2826.476 kb on + strandat 2826.477 kb on - strandat 2826.477 kb on - strandat 2826.535 kb on - strandat 2826.535 kb on - strandat 2826.558 kb on - strandat 2826.651 kb on - strandat 2826.689 kb on + strandat 2826.690 kb on - strandat 2826.692 kb on - strandat 2826.693 kb on + strandat 2826.694 kb on - strandat 2826.789 kb on + strandat 2826.815 kb on - strandat 2826.864 kb on - strandat 2826.884 kb on + strandat 2826.974 kb on - strandat 2827.029 kb on - strandat 2827.039 kb on + strandat 2827.040 kb on - strandat 2827.062 kb on - strandat 2827.217 kb on - strandat 2827.240 kb on - strand, within IAI47_13355at 2827.240 kb on - strand, within IAI47_13355at 2827.242 kb on + strand, within IAI47_13355at 2827.243 kb on - strand, within IAI47_13355at 2827.247 kb on + strand, within IAI47_13355at 2827.247 kb on + strand, within IAI47_13355at 2827.254 kb on - strand, within IAI47_13355at 2827.254 kb on - strand, within IAI47_13355at 2827.264 kb on + strand, within IAI47_13355at 2827.362 kb on + strand, within IAI47_13355at 2827.401 kb on - strand, within IAI47_13355at 2827.402 kb on + strand, within IAI47_13355at 2827.403 kb on - strand, within IAI47_13355at 2827.416 kb on - strand, within IAI47_13355at 2827.416 kb on - strand, within IAI47_13355at 2827.425 kb on + strand, within IAI47_13355at 2827.436 kb on - strand, within IAI47_13355at 2827.436 kb on - strand, within IAI47_13355at 2827.509 kb on + strand, within IAI47_13355at 2827.509 kb on + strand, within IAI47_13355at 2827.509 kb on + strand, within IAI47_13355at 2827.510 kb on - strand, within IAI47_13355at 2827.510 kb on - strand, within IAI47_13355at 2827.522 kb on + strand, within IAI47_13355at 2827.522 kb on + strand, within IAI47_13355at 2827.522 kb on + strand, within IAI47_13355at 2827.522 kb on + strand, within IAI47_13355at 2827.523 kb on - strand, within IAI47_13355at 2827.552 kb on + strand, within IAI47_13355at 2827.552 kb on + strand, within IAI47_13355at 2827.552 kb on + strand, within IAI47_13355at 2827.552 kb on + strand, within IAI47_13355at 2827.552 kb on + strand, within IAI47_13355at 2827.552 kb on + strand, within IAI47_13355at 2827.553 kb on - strand, within IAI47_13355at 2827.553 kb on - strand, within IAI47_13355at 2827.553 kb on - strand, within IAI47_13355at 2827.553 kb on - strand, within IAI47_13355at 2827.557 kb on - strand, within IAI47_13355at 2827.575 kb on + strand, within IAI47_13355at 2827.576 kb on - strand, within IAI47_13355at 2827.576 kb on - strand, within IAI47_13355at 2827.576 kb on - strand, within IAI47_13355at 2827.603 kb on + strand, within IAI47_13355at 2827.603 kb on + strand, within IAI47_13355at 2827.608 kb on + strand, within IAI47_13355at 2827.608 kb on + strand, within IAI47_13355at 2827.608 kb on + strand, within IAI47_13355at 2827.608 kb on + strand, within IAI47_13355at 2827.608 kb on + strand, within IAI47_13355at 2827.608 kb on + strand, within IAI47_13355at 2827.608 kb on + strand, within IAI47_13355at 2827.608 kb on + strand, within IAI47_13355at 2827.608 kb on + strand, within IAI47_13355at 2827.608 kb on + strand, within IAI47_13355at 2827.608 kb on + strand, within IAI47_13355at 2827.608 kb on + strand, within IAI47_13355at 2827.609 kb on - strand, within IAI47_13355at 2827.609 kb on - strand, within IAI47_13355at 2827.609 kb on - strand, within IAI47_13355at 2827.609 kb on - strand, within IAI47_13355at 2827.609 kb on - strand, within IAI47_13355at 2827.609 kb on - strand, within IAI47_13355at 2827.612 kb on + strand, within IAI47_13355at 2827.612 kb on + strand, within IAI47_13355at 2827.612 kb on + strand, within IAI47_13355at 2827.613 kb on - strand, within IAI47_13355at 2827.614 kb on + strand, within IAI47_13355at 2827.614 kb on + strand, within IAI47_13355at 2827.615 kb on - strand, within IAI47_13355at 2827.615 kb on - strand, within IAI47_13355at 2827.615 kb on - strand, within IAI47_13355at 2827.618 kb on + strand, within IAI47_13355at 2827.619 kb on - strand, within IAI47_13355at 2827.619 kb on - strand, within IAI47_13355at 2827.619 kb on - strand, within IAI47_13355at 2827.689 kb on + strand, within IAI47_13355at 2827.690 kb on - strand, within IAI47_13355at 2827.699 kb on - strand, within IAI47_13355at 2827.708 kb on + strand, within IAI47_13355at 2827.709 kb on - strand, within IAI47_13355at 2827.735 kb on + strand, within IAI47_13355at 2827.736 kb on - strand, within IAI47_13355at 2827.736 kb on - strand, within IAI47_13355at 2827.736 kb on - strand, within IAI47_13355at 2827.746 kb on - strand, within IAI47_13355at 2827.746 kb on - strand, within IAI47_13355at 2827.791 kb on - strand, within IAI47_13355at 2828.320 kb on + strandat 2828.322 kb on + strandat 2828.323 kb on - strandat 2828.401 kb on + strandat 2828.402 kb on - strandat 2828.412 kb on + strand, within IAI47_13360at 2828.480 kb on + strand, within IAI47_13360at 2828.481 kb on - strand, within IAI47_13360at 2828.559 kb on + strand, within IAI47_13360at 2828.624 kb on + strand, within IAI47_13360at 2828.672 kb on + strand, within IAI47_13360at 2828.672 kb on + strand, within IAI47_13360at 2828.673 kb on - strand, within IAI47_13360at 2828.673 kb on - strand, within IAI47_13360at 2828.674 kb on + strand, within IAI47_13360at 2828.695 kb on + strand, within IAI47_13360at 2828.719 kb on - strand, within IAI47_13360at 2828.747 kb on + strand, within IAI47_13360at 2828.747 kb on + strand, within IAI47_13360at 2828.748 kb on - strand, within IAI47_13360at 2828.749 kb on + strand, within IAI47_13360at 2828.749 kb on + strand, within IAI47_13360at 2828.749 kb on + strand, within IAI47_13360at 2828.749 kb on + strand, within IAI47_13360at 2828.749 kb on + strand, within IAI47_13360at 2828.750 kb on - strand, within IAI47_13360at 2828.750 kb on - strand, within IAI47_13360at 2828.750 kb on - strand, within IAI47_13360at 2828.750 kb on - strand, within IAI47_13360at 2828.750 kb on - strand, within IAI47_13360at 2828.750 kb on - strand, within IAI47_13360at 2828.750 kb on - strand, within IAI47_13360at 2828.779 kb on + strand, within IAI47_13360at 2828.779 kb on + strand, within IAI47_13360at 2828.779 kb on + strand, within IAI47_13360at 2828.780 kb on - strand, within IAI47_13360at 2828.780 kb on - strand, within IAI47_13360at 2828.780 kb on - strand, within IAI47_13360at 2828.780 kb on - strand, within IAI47_13360at 2828.780 kb on - strand, within IAI47_13360at 2828.780 kb on - strand, within IAI47_13360at 2828.780 kb on - strand, within IAI47_13360at 2828.780 kb on - strand, within IAI47_13360at 2828.781 kb on + strand, within IAI47_13360at 2828.781 kb on + strand, within IAI47_13360at 2828.781 kb on + strand, within IAI47_13360at 2828.781 kb on + strand, within IAI47_13360at 2828.782 kb on - strand, within IAI47_13360at 2828.782 kb on - strand, within IAI47_13360at 2828.793 kb on + strand, within IAI47_13360at 2828.793 kb on + strand, within IAI47_13360at 2828.793 kb on + strand, within IAI47_13360at 2828.794 kb on - strand, within IAI47_13360at 2828.805 kb on - strand, within IAI47_13360at 2828.813 kb on + strand, within IAI47_13360at 2828.814 kb on - strand, within IAI47_13360at 2828.865 kb on + strand, within IAI47_13360at 2828.865 kb on + strand, within IAI47_13360at 2828.866 kb on - strand, within IAI47_13360at 2828.866 kb on - strand, within IAI47_13360at 2828.867 kb on + strand, within IAI47_13360at 2828.873 kb on + strand, within IAI47_13360at 2828.873 kb on + strand, within IAI47_13360at 2828.874 kb on - strand, within IAI47_13360at 2828.874 kb on - strand, within IAI47_13360at 2828.876 kb on + strand, within IAI47_13360at 2828.876 kb on + strand, within IAI47_13360at 2828.876 kb on + strand, within IAI47_13360at 2828.876 kb on + strand, within IAI47_13360at 2828.876 kb on + strand, within IAI47_13360at 2828.877 kb on - strand, within IAI47_13360at 2828.921 kb on - strand, within IAI47_13360at 2828.940 kb on - strand, within IAI47_13360

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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2,826,204 + +0.6
2,826,204 + -2.2
2,826,204 + +0.2
2,826,205 - -0.1
2,826,205 - +0.8
2,826,205 - +0.5
2,826,205 - -0.0
2,826,205 - +0.4
2,826,205 - +0.2
2,826,211 + +1.0
2,826,211 + +0.0
2,826,211 + -0.8
2,826,211 + -1.2
2,826,212 - -2.2
2,826,212 - +3.8
2,826,212 - +1.6
2,826,212 - +0.7
2,826,212 - +0.6
2,826,212 - +0.4
2,826,212 - +1.1
2,826,212 - +1.1
2,826,212 - +0.9
2,826,254 + +0.6
2,826,254 + +0.1
2,826,254 + -0.2
2,826,279 + +0.5
2,826,279 + -0.0
2,826,292 + +0.4
2,826,292 + -0.6
2,826,292 + +1.3
2,826,292 + -0.5
2,826,293 - -0.1
2,826,293 - -1.5
2,826,293 - -0.4
2,826,293 - -0.1
2,826,293 - -0.8
2,826,293 - +0.2
2,826,293 - +0.4
2,826,295 + -0.5
2,826,295 + -0.4
2,826,295 + +0.1
2,826,295 + -0.8
2,826,295 + -0.7
2,826,295 + -1.0
2,826,295 + -1.4
2,826,295 + -1.4
2,826,295 + +0.2
2,826,323 + -0.6
2,826,323 + +0.3
2,826,323 + -0.6
2,826,323 + -2.3
2,826,324 - -0.8
2,826,352 + -0.7
2,826,367 + +0.3
2,826,367 + +0.0
2,826,422 + -0.4
2,826,435 + -1.2
2,826,435 + -0.7
2,826,435 + +0.0
2,826,436 - -2.3
2,826,436 - +0.4
2,826,436 - +0.7
2,826,436 - -0.4
2,826,468 + -0.1
2,826,468 + +0.2
2,826,468 + -0.5
2,826,468 + -0.3
2,826,469 - +0.4
2,826,469 - +0.8
2,826,476 + -0.5
2,826,476 + +0.6
2,826,477 - -0.2
2,826,477 - +0.0
2,826,535 - -0.3
2,826,535 - +0.4
2,826,558 - +1.0
2,826,651 - -0.8
2,826,689 + -1.0
2,826,690 - +0.7
2,826,692 - +1.0
2,826,693 + -0.7
2,826,694 - -0.2
2,826,789 + +0.8
2,826,815 - -0.8
2,826,864 - +0.4
2,826,884 + -0.9
2,826,974 - -0.4
2,827,029 - +0.6
2,827,039 + -0.2
2,827,040 - -1.9
2,827,062 - -0.3
2,827,217 - -1.2
2,827,240 - IAI47_13355 0.13 +0.6
2,827,240 - IAI47_13355 0.13 -1.3
2,827,242 + IAI47_13355 0.13 +0.8
2,827,243 - IAI47_13355 0.13 -0.5
2,827,247 + IAI47_13355 0.13 +0.3
2,827,247 + IAI47_13355 0.13 +0.2
2,827,254 - IAI47_13355 0.14 -0.4
2,827,254 - IAI47_13355 0.14 -1.1
2,827,264 + IAI47_13355 0.15 -0.8
2,827,362 + IAI47_13355 0.26 -0.7
2,827,401 - IAI47_13355 0.31 -0.6
2,827,402 + IAI47_13355 0.31 -0.4
2,827,403 - IAI47_13355 0.31 -0.7
2,827,416 - IAI47_13355 0.33 -0.8
2,827,416 - IAI47_13355 0.33 -1.2
2,827,425 + IAI47_13355 0.34 +0.9
2,827,436 - IAI47_13355 0.35 -1.7
2,827,436 - IAI47_13355 0.35 -0.0
2,827,509 + IAI47_13355 0.43 -1.0
2,827,509 + IAI47_13355 0.43 +0.1
2,827,509 + IAI47_13355 0.43 -0.4
2,827,510 - IAI47_13355 0.43 -0.8
2,827,510 - IAI47_13355 0.43 +0.0
2,827,522 + IAI47_13355 0.45 -0.1
2,827,522 + IAI47_13355 0.45 +0.0
2,827,522 + IAI47_13355 0.45 -1.4
2,827,522 + IAI47_13355 0.45 -1.5
2,827,523 - IAI47_13355 0.45 -0.1
2,827,552 + IAI47_13355 0.48 +0.4
2,827,552 + IAI47_13355 0.48 +0.3
2,827,552 + IAI47_13355 0.48 -0.9
2,827,552 + IAI47_13355 0.48 +0.7
2,827,552 + IAI47_13355 0.48 -0.1
2,827,552 + IAI47_13355 0.48 -2.5
2,827,553 - IAI47_13355 0.48 -0.6
2,827,553 - IAI47_13355 0.48 +0.7
2,827,553 - IAI47_13355 0.48 -1.8
2,827,553 - IAI47_13355 0.48 -1.2
2,827,557 - IAI47_13355 0.49 +1.0
2,827,575 + IAI47_13355 0.51 +0.8
2,827,576 - IAI47_13355 0.51 -1.0
2,827,576 - IAI47_13355 0.51 -0.5
2,827,576 - IAI47_13355 0.51 -0.4
2,827,603 + IAI47_13355 0.54 -0.0
2,827,603 + IAI47_13355 0.54 -0.8
2,827,608 + IAI47_13355 0.54 -1.7
2,827,608 + IAI47_13355 0.54 +0.1
2,827,608 + IAI47_13355 0.54 -1.5
2,827,608 + IAI47_13355 0.54 -0.4
2,827,608 + IAI47_13355 0.54 -1.0
2,827,608 + IAI47_13355 0.54 -1.2
2,827,608 + IAI47_13355 0.54 -0.7
2,827,608 + IAI47_13355 0.54 -0.2
2,827,608 + IAI47_13355 0.54 -0.6
2,827,608 + IAI47_13355 0.54 -1.3
2,827,608 + IAI47_13355 0.54 -2.1
2,827,608 + IAI47_13355 0.54 -1.7
2,827,609 - IAI47_13355 0.54 -0.8
2,827,609 - IAI47_13355 0.54 -1.7
2,827,609 - IAI47_13355 0.54 -0.2
2,827,609 - IAI47_13355 0.54 -1.6
2,827,609 - IAI47_13355 0.54 -1.1
2,827,609 - IAI47_13355 0.54 -1.0
2,827,612 + IAI47_13355 0.55 -1.1
2,827,612 + IAI47_13355 0.55 -0.9
2,827,612 + IAI47_13355 0.55 -1.8
2,827,613 - IAI47_13355 0.55 -1.0
2,827,614 + IAI47_13355 0.55 -0.7
2,827,614 + IAI47_13355 0.55 -0.7
2,827,615 - IAI47_13355 0.55 -0.7
2,827,615 - IAI47_13355 0.55 -0.6
2,827,615 - IAI47_13355 0.55 -0.7
2,827,618 + IAI47_13355 0.56 -0.3
2,827,619 - IAI47_13355 0.56 +0.0
2,827,619 - IAI47_13355 0.56 -1.0
2,827,619 - IAI47_13355 0.56 -0.4
2,827,689 + IAI47_13355 0.64 -0.6
2,827,690 - IAI47_13355 0.64 -1.6
2,827,699 - IAI47_13355 0.65 -0.8
2,827,708 + IAI47_13355 0.66 -1.2
2,827,709 - IAI47_13355 0.66 +0.0
2,827,735 + IAI47_13355 0.69 -1.1
2,827,736 - IAI47_13355 0.69 -1.0
2,827,736 - IAI47_13355 0.69 -1.0
2,827,736 - IAI47_13355 0.69 +0.3
2,827,746 - IAI47_13355 0.70 +0.2
2,827,746 - IAI47_13355 0.70 -1.9
2,827,791 - IAI47_13355 0.75 +1.7
2,828,320 + -0.6
2,828,322 + -1.1
2,828,323 - +0.8
2,828,401 + -0.4
2,828,402 - -0.6
2,828,412 + IAI47_13360 0.10 -1.4
2,828,480 + IAI47_13360 0.18 +0.5
2,828,481 - IAI47_13360 0.18 -0.3
2,828,559 + IAI47_13360 0.26 -0.4
2,828,624 + IAI47_13360 0.33 +0.3
2,828,672 + IAI47_13360 0.38 +0.7
2,828,672 + IAI47_13360 0.38 +0.8
2,828,673 - IAI47_13360 0.38 -1.1
2,828,673 - IAI47_13360 0.38 +1.0
2,828,674 + IAI47_13360 0.38 -0.2
2,828,695 + IAI47_13360 0.41 +0.8
2,828,719 - IAI47_13360 0.43 -0.5
2,828,747 + IAI47_13360 0.46 -2.1
2,828,747 + IAI47_13360 0.46 +0.4
2,828,748 - IAI47_13360 0.46 -0.4
2,828,749 + IAI47_13360 0.46 -0.4
2,828,749 + IAI47_13360 0.46 -0.4
2,828,749 + IAI47_13360 0.46 +0.0
2,828,749 + IAI47_13360 0.46 +0.1
2,828,749 + IAI47_13360 0.46 +0.4
2,828,750 - IAI47_13360 0.47 -0.2
2,828,750 - IAI47_13360 0.47 -0.8
2,828,750 - IAI47_13360 0.47 +1.7
2,828,750 - IAI47_13360 0.47 +0.2
2,828,750 - IAI47_13360 0.47 -0.4
2,828,750 - IAI47_13360 0.47 -1.0
2,828,750 - IAI47_13360 0.47 +0.7
2,828,779 + IAI47_13360 0.50 -1.1
2,828,779 + IAI47_13360 0.50 +0.5
2,828,779 + IAI47_13360 0.50 -0.7
2,828,780 - IAI47_13360 0.50 +0.4
2,828,780 - IAI47_13360 0.50 +0.6
2,828,780 - IAI47_13360 0.50 -0.6
2,828,780 - IAI47_13360 0.50 +0.2
2,828,780 - IAI47_13360 0.50 +1.8
2,828,780 - IAI47_13360 0.50 -0.2
2,828,780 - IAI47_13360 0.50 -0.1
2,828,780 - IAI47_13360 0.50 -0.6
2,828,781 + IAI47_13360 0.50 -1.6
2,828,781 + IAI47_13360 0.50 -2.2
2,828,781 + IAI47_13360 0.50 -0.2
2,828,781 + IAI47_13360 0.50 +0.4
2,828,782 - IAI47_13360 0.50 -1.6
2,828,782 - IAI47_13360 0.50 -0.4
2,828,793 + IAI47_13360 0.51 -0.6
2,828,793 + IAI47_13360 0.51 -2.2
2,828,793 + IAI47_13360 0.51 -0.6
2,828,794 - IAI47_13360 0.51 -0.8
2,828,805 - IAI47_13360 0.52 +0.2
2,828,813 + IAI47_13360 0.53 -1.7
2,828,814 - IAI47_13360 0.53 -0.2
2,828,865 + IAI47_13360 0.59 +1.7
2,828,865 + IAI47_13360 0.59 +1.1
2,828,866 - IAI47_13360 0.59 -0.7
2,828,866 - IAI47_13360 0.59 -0.4
2,828,867 + IAI47_13360 0.59 +1.4
2,828,873 + IAI47_13360 0.60 +0.3
2,828,873 + IAI47_13360 0.60 +0.1
2,828,874 - IAI47_13360 0.60 -0.1
2,828,874 - IAI47_13360 0.60 +1.6
2,828,876 + IAI47_13360 0.60 -2.4
2,828,876 + IAI47_13360 0.60 +1.7
2,828,876 + IAI47_13360 0.60 +1.4
2,828,876 + IAI47_13360 0.60 +0.2
2,828,876 + IAI47_13360 0.60 -0.0
2,828,877 - IAI47_13360 0.60 -2.7
2,828,921 - IAI47_13360 0.65 -0.6
2,828,940 - IAI47_13360 0.67 -0.5

Or see this region's nucleotide sequence