Strain Fitness in Pantoea sp. MT58 around IAI47_06965

Experiment: Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_06960 and IAI47_06965 are separated by 70 nucleotidesIAI47_06965 and IAI47_06970 are separated by 46 nucleotides IAI47_06960: IAI47_06960 - glycosyltransferase family 2 protein, at 1,465,556 to 1,466,473 _06960 IAI47_06965: IAI47_06965 - glycosyltransferase family 2 protein, at 1,466,544 to 1,467,296 _06965 IAI47_06970: IAI47_06970 - glycosyltransferase, at 1,467,343 to 1,468,377 _06970 Position (kb) 1466 1467 1468Strain fitness (log2 ratio) -1 0 1at 1466.522 kb on + strandat 1466.576 kb on + strandat 1466.576 kb on + strandat 1466.577 kb on - strandat 1466.586 kb on + strandat 1466.587 kb on - strandat 1466.672 kb on + strand, within IAI47_06965at 1466.863 kb on + strand, within IAI47_06965at 1466.910 kb on + strand, within IAI47_06965at 1467.240 kb on + strandat 1467.255 kb on + strandat 1467.255 kb on + strandat 1467.284 kb on + strandat 1467.318 kb on + strandat 1467.321 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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1,466,522 + +0.1
1,466,576 + +0.9
1,466,576 + -0.7
1,466,577 - +1.1
1,466,586 + -0.5
1,466,587 - -0.2
1,466,672 + IAI47_06965 0.17 +0.5
1,466,863 + IAI47_06965 0.42 +0.1
1,466,910 + IAI47_06965 0.49 -0.6
1,467,240 + +0.5
1,467,255 + -0.3
1,467,255 + -0.3
1,467,284 + +0.9
1,467,318 + +0.4
1,467,321 + -1.1

Or see this region's nucleotide sequence