Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06569

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06568 and H281DRAFT_06569 are separated by 961 nucleotidesH281DRAFT_06569 and H281DRAFT_06570 are separated by 739 nucleotides H281DRAFT_06568: H281DRAFT_06568 - DNA-binding protein H-NS, at 8,696 to 8,980 _06568 H281DRAFT_06569: H281DRAFT_06569 - hypothetical protein, at 9,942 to 10,133 _06569 H281DRAFT_06570: H281DRAFT_06570 - hypothetical protein, at 10,873 to 11,676 _06570 Position (kb) 9 10 11Strain fitness (log2 ratio) -2 -1 0 1at 8.960 kb on + strandat 8.960 kb on + strandat 8.961 kb on - strandat 8.961 kb on - strandat 8.971 kb on - strandat 9.016 kb on + strandat 9.016 kb on + strandat 9.016 kb on + strandat 9.017 kb on - strandat 9.095 kb on + strandat 9.095 kb on + strandat 9.195 kb on - strandat 9.220 kb on + strandat 9.288 kb on + strandat 9.288 kb on + strandat 9.288 kb on + strandat 9.288 kb on + strandat 9.288 kb on + strandat 9.289 kb on - strandat 9.412 kb on + strandat 9.413 kb on - strandat 9.426 kb on - strandat 9.511 kb on + strandat 9.512 kb on - strandat 9.565 kb on + strandat 9.680 kb on + strandat 9.680 kb on + strandat 9.680 kb on + strandat 9.681 kb on - strandat 9.681 kb on - strandat 9.681 kb on - strandat 9.685 kb on + strandat 9.713 kb on + strandat 9.714 kb on - strandat 9.714 kb on - strandat 9.714 kb on - strandat 9.834 kb on + strandat 9.857 kb on + strandat 10.009 kb on + strand, within H281DRAFT_06569at 10.009 kb on + strand, within H281DRAFT_06569at 10.010 kb on - strand, within H281DRAFT_06569at 10.044 kb on + strand, within H281DRAFT_06569at 10.045 kb on - strand, within H281DRAFT_06569at 10.101 kb on + strand, within H281DRAFT_06569at 10.101 kb on + strand, within H281DRAFT_06569at 10.101 kb on + strand, within H281DRAFT_06569at 10.207 kb on + strandat 10.208 kb on - strandat 10.245 kb on + strandat 10.283 kb on + strandat 10.284 kb on - strandat 10.289 kb on - strandat 10.394 kb on + strandat 10.540 kb on - strandat 10.540 kb on - strandat 10.571 kb on + strandat 10.650 kb on + strandat 10.650 kb on + strandat 10.651 kb on - strandat 10.651 kb on - strandat 10.651 kb on - strandat 10.910 kb on + strandat 10.910 kb on + strandat 10.974 kb on + strand, within H281DRAFT_06570at 10.978 kb on + strand, within H281DRAFT_06570at 10.978 kb on + strand, within H281DRAFT_06570at 10.978 kb on + strand, within H281DRAFT_06570at 10.978 kb on + strand, within H281DRAFT_06570at 10.979 kb on - strand, within H281DRAFT_06570at 11.002 kb on + strand, within H281DRAFT_06570at 11.004 kb on + strand, within H281DRAFT_06570at 11.131 kb on + strand, within H281DRAFT_06570

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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8,960 + +0.4
8,960 + +0.6
8,961 - +1.3
8,961 - -0.5
8,971 - -0.9
9,016 + +0.4
9,016 + -0.3
9,016 + +0.2
9,017 - +0.8
9,095 + -0.4
9,095 + -1.8
9,195 - +0.6
9,220 + +0.6
9,288 + +0.0
9,288 + -1.2
9,288 + +0.2
9,288 + +0.3
9,288 + +0.9
9,289 - +0.2
9,412 + +0.5
9,413 - +0.9
9,426 - +0.1
9,511 + +0.4
9,512 - +0.4
9,565 + -0.2
9,680 + +1.1
9,680 + +0.8
9,680 + +1.0
9,681 - +0.4
9,681 - -0.4
9,681 - +0.2
9,685 + -0.2
9,713 + +0.8
9,714 - +0.1
9,714 - -0.6
9,714 - -0.5
9,834 + +1.0
9,857 + +1.3
10,009 + H281DRAFT_06569 0.35 +0.4
10,009 + H281DRAFT_06569 0.35 -1.6
10,010 - H281DRAFT_06569 0.35 -0.7
10,044 + H281DRAFT_06569 0.53 +0.2
10,045 - H281DRAFT_06569 0.54 -0.6
10,101 + H281DRAFT_06569 0.83 +0.1
10,101 + H281DRAFT_06569 0.83 +0.1
10,101 + H281DRAFT_06569 0.83 -0.4
10,207 + +0.7
10,208 - +1.3
10,245 + -0.4
10,283 + +1.0
10,284 - +0.7
10,289 - +0.9
10,394 + +0.2
10,540 - -0.5
10,540 - +0.7
10,571 + +0.4
10,650 + -1.5
10,650 + -0.9
10,651 - +1.0
10,651 - +0.4
10,651 - +1.0
10,910 + +0.3
10,910 + +0.1
10,974 + H281DRAFT_06570 0.13 -1.5
10,978 + H281DRAFT_06570 0.13 +0.4
10,978 + H281DRAFT_06570 0.13 +0.0
10,978 + H281DRAFT_06570 0.13 +0.5
10,978 + H281DRAFT_06570 0.13 +0.7
10,979 - H281DRAFT_06570 0.13 +0.4
11,002 + H281DRAFT_06570 0.16 -0.8
11,004 + H281DRAFT_06570 0.16 -0.0
11,131 + H281DRAFT_06570 0.32 -1.0

Or see this region's nucleotide sequence