Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06520 and H281DRAFT_06521 are separated by 36 nucleotides H281DRAFT_06521 and H281DRAFT_06522 are separated by 27 nucleotides H281DRAFT_06522 and H281DRAFT_06523 overlap by 193 nucleotides H281DRAFT_06523 and H281DRAFT_06524 overlap by 4 nucleotides
H281DRAFT_06520: H281DRAFT_06520 - c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains, at 534 to 1,478
_06520
H281DRAFT_06521: H281DRAFT_06521 - magnesium chelatase subunit ChlD-like protein, at 1,515 to 1,955
_06521
H281DRAFT_06522: H281DRAFT_06522 - hypothetical protein, at 1,983 to 2,420
_06522
H281DRAFT_06523: H281DRAFT_06523 - protoporphyrin IX magnesium-chelatase (EC 6.6.1.1), at 2,228 to 3,310
_06523
H281DRAFT_06524: H281DRAFT_06524 - cobaltochelatase CobN subunit, at 3,307 to 7,122
_06524
Position (kb)
2
3
4 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1.309 kb on + strand, within H281DRAFT_06520 at 1.309 kb on + strand, within H281DRAFT_06520 at 1.309 kb on + strand, within H281DRAFT_06520 at 1.310 kb on - strand, within H281DRAFT_06520 at 1.310 kb on - strand, within H281DRAFT_06520 at 1.411 kb on + strand at 1.412 kb on - strand at 1.513 kb on + strand at 1.514 kb on - strand at 1.618 kb on - strand, within H281DRAFT_06521 at 2.298 kb on + strand at 2.344 kb on + strand at 2.410 kb on + strand at 2.564 kb on - strand, within H281DRAFT_06523 at 2.649 kb on + strand, within H281DRAFT_06523 at 2.703 kb on + strand, within H281DRAFT_06523 at 2.857 kb on + strand, within H281DRAFT_06523 at 2.857 kb on + strand, within H281DRAFT_06523 at 2.958 kb on + strand, within H281DRAFT_06523 at 2.958 kb on + strand, within H281DRAFT_06523 at 2.958 kb on + strand, within H281DRAFT_06523 at 2.958 kb on + strand, within H281DRAFT_06523 at 2.959 kb on - strand, within H281DRAFT_06523 at 2.959 kb on - strand, within H281DRAFT_06523 at 3.491 kb on + strand at 3.491 kb on + strand at 3.492 kb on - strand at 3.548 kb on + strand at 3.554 kb on + strand at 3.555 kb on - strand at 3.560 kb on + strand at 3.594 kb on + strand at 3.596 kb on + strand at 3.597 kb on - strand at 3.611 kb on - strand at 3.720 kb on - strand, within H281DRAFT_06524 at 3.786 kb on - strand, within H281DRAFT_06524 at 3.835 kb on + strand, within H281DRAFT_06524 at 3.835 kb on + strand, within H281DRAFT_06524 at 3.905 kb on + strand, within H281DRAFT_06524 at 3.906 kb on - strand, within H281DRAFT_06524 at 3.906 kb on - strand, within H281DRAFT_06524 at 3.929 kb on + strand, within H281DRAFT_06524 at 3.930 kb on - strand, within H281DRAFT_06524
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,309 + H281DRAFT_06520 0.82 +1.3 1,309 + H281DRAFT_06520 0.82 -0.4 1,309 + H281DRAFT_06520 0.82 -0.3 1,310 - H281DRAFT_06520 0.82 -1.5 1,310 - H281DRAFT_06520 0.82 +0.6 1,411 + +0.3 1,412 - -0.1 1,513 + +0.5 1,514 - -0.7 1,618 - H281DRAFT_06521 0.23 -0.4 2,298 + -1.5 2,344 + +1.5 2,410 + -1.5 2,564 - H281DRAFT_06523 0.31 +0.2 2,649 + H281DRAFT_06523 0.39 -1.9 2,703 + H281DRAFT_06523 0.44 -1.4 2,857 + H281DRAFT_06523 0.58 +0.0 2,857 + H281DRAFT_06523 0.58 -3.1 2,958 + H281DRAFT_06523 0.67 -0.8 2,958 + H281DRAFT_06523 0.67 -0.7 2,958 + H281DRAFT_06523 0.67 -1.6 2,958 + H281DRAFT_06523 0.67 -2.1 2,959 - H281DRAFT_06523 0.67 -1.6 2,959 - H281DRAFT_06523 0.67 +0.1 3,491 + -1.9 3,491 + -1.4 3,492 - -0.9 3,548 + -1.4 3,554 + -0.7 3,555 - -1.2 3,560 + -0.1 3,594 + -0.1 3,596 + -1.6 3,597 - -3.2 3,611 - -1.9 3,720 - H281DRAFT_06524 0.11 -0.8 3,786 - H281DRAFT_06524 0.13 +1.1 3,835 + H281DRAFT_06524 0.14 -1.0 3,835 + H281DRAFT_06524 0.14 -0.7 3,905 + H281DRAFT_06524 0.16 -0.9 3,906 - H281DRAFT_06524 0.16 -2.3 3,906 - H281DRAFT_06524 0.16 -1.6 3,929 + H281DRAFT_06524 0.16 -1.7 3,930 - H281DRAFT_06524 0.16 -3.2
Or see this region's nucleotide sequence