Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06523

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06520 and H281DRAFT_06521 are separated by 36 nucleotidesH281DRAFT_06521 and H281DRAFT_06522 are separated by 27 nucleotidesH281DRAFT_06522 and H281DRAFT_06523 overlap by 193 nucleotidesH281DRAFT_06523 and H281DRAFT_06524 overlap by 4 nucleotides H281DRAFT_06520: H281DRAFT_06520 - c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains, at 534 to 1,478 _06520 H281DRAFT_06521: H281DRAFT_06521 - magnesium chelatase subunit ChlD-like protein, at 1,515 to 1,955 _06521 H281DRAFT_06522: H281DRAFT_06522 - hypothetical protein, at 1,983 to 2,420 _06522 H281DRAFT_06523: H281DRAFT_06523 - protoporphyrin IX magnesium-chelatase (EC 6.6.1.1), at 2,228 to 3,310 _06523 H281DRAFT_06524: H281DRAFT_06524 - cobaltochelatase CobN subunit, at 3,307 to 7,122 _06524 Position (kb) 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1at 1.309 kb on + strand, within H281DRAFT_06520at 1.309 kb on + strand, within H281DRAFT_06520at 1.309 kb on + strand, within H281DRAFT_06520at 1.310 kb on - strand, within H281DRAFT_06520at 1.310 kb on - strand, within H281DRAFT_06520at 1.411 kb on + strandat 1.412 kb on - strandat 1.513 kb on + strandat 1.514 kb on - strandat 1.618 kb on - strand, within H281DRAFT_06521at 2.298 kb on + strandat 2.344 kb on + strandat 2.410 kb on + strandat 2.564 kb on - strand, within H281DRAFT_06523at 2.649 kb on + strand, within H281DRAFT_06523at 2.703 kb on + strand, within H281DRAFT_06523at 2.857 kb on + strand, within H281DRAFT_06523at 2.857 kb on + strand, within H281DRAFT_06523at 2.958 kb on + strand, within H281DRAFT_06523at 2.958 kb on + strand, within H281DRAFT_06523at 2.958 kb on + strand, within H281DRAFT_06523at 2.958 kb on + strand, within H281DRAFT_06523at 2.959 kb on - strand, within H281DRAFT_06523at 2.959 kb on - strand, within H281DRAFT_06523at 3.491 kb on + strandat 3.491 kb on + strandat 3.492 kb on - strandat 3.548 kb on + strandat 3.554 kb on + strandat 3.555 kb on - strandat 3.560 kb on + strandat 3.594 kb on + strandat 3.596 kb on + strandat 3.597 kb on - strandat 3.611 kb on - strandat 3.720 kb on - strand, within H281DRAFT_06524at 3.786 kb on - strand, within H281DRAFT_06524at 3.835 kb on + strand, within H281DRAFT_06524at 3.835 kb on + strand, within H281DRAFT_06524at 3.905 kb on + strand, within H281DRAFT_06524at 3.906 kb on - strand, within H281DRAFT_06524at 3.906 kb on - strand, within H281DRAFT_06524at 3.929 kb on + strand, within H281DRAFT_06524at 3.930 kb on - strand, within H281DRAFT_06524

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,309 + H281DRAFT_06520 0.82 +1.3
1,309 + H281DRAFT_06520 0.82 -0.4
1,309 + H281DRAFT_06520 0.82 -0.3
1,310 - H281DRAFT_06520 0.82 -1.5
1,310 - H281DRAFT_06520 0.82 +0.6
1,411 + +0.3
1,412 - -0.1
1,513 + +0.5
1,514 - -0.7
1,618 - H281DRAFT_06521 0.23 -0.4
2,298 + -1.5
2,344 + +1.5
2,410 + -1.5
2,564 - H281DRAFT_06523 0.31 +0.2
2,649 + H281DRAFT_06523 0.39 -1.9
2,703 + H281DRAFT_06523 0.44 -1.4
2,857 + H281DRAFT_06523 0.58 +0.0
2,857 + H281DRAFT_06523 0.58 -3.1
2,958 + H281DRAFT_06523 0.67 -0.8
2,958 + H281DRAFT_06523 0.67 -0.7
2,958 + H281DRAFT_06523 0.67 -1.6
2,958 + H281DRAFT_06523 0.67 -2.1
2,959 - H281DRAFT_06523 0.67 -1.6
2,959 - H281DRAFT_06523 0.67 +0.1
3,491 + -1.9
3,491 + -1.4
3,492 - -0.9
3,548 + -1.4
3,554 + -0.7
3,555 - -1.2
3,560 + -0.1
3,594 + -0.1
3,596 + -1.6
3,597 - -3.2
3,611 - -1.9
3,720 - H281DRAFT_06524 0.11 -0.8
3,786 - H281DRAFT_06524 0.13 +1.1
3,835 + H281DRAFT_06524 0.14 -1.0
3,835 + H281DRAFT_06524 0.14 -0.7
3,905 + H281DRAFT_06524 0.16 -0.9
3,906 - H281DRAFT_06524 0.16 -2.3
3,906 - H281DRAFT_06524 0.16 -1.6
3,929 + H281DRAFT_06524 0.16 -1.7
3,930 - H281DRAFT_06524 0.16 -3.2

Or see this region's nucleotide sequence