Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06369

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06368 and H281DRAFT_06369 are separated by 41 nucleotidesH281DRAFT_06369 and H281DRAFT_06370 are separated by 40 nucleotides H281DRAFT_06368: H281DRAFT_06368 - pilus assembly protein CpaF, at 40,377 to 41,744 _06368 H281DRAFT_06369: H281DRAFT_06369 - tight adherence protein B, at 41,786 to 42,769 _06369 H281DRAFT_06370: H281DRAFT_06370 - tight adherence protein C, at 42,810 to 43,766 _06370 Position (kb) 41 42 43Strain fitness (log2 ratio) -2 -1 0 1at 41.713 kb on - strandat 41.785 kb on + strandat 41.786 kb on - strandat 41.786 kb on - strandat 41.845 kb on - strandat 41.845 kb on - strandat 41.855 kb on + strandat 41.856 kb on - strandat 42.386 kb on + strand, within H281DRAFT_06369at 42.387 kb on - strand, within H281DRAFT_06369at 42.765 kb on + strandat 42.912 kb on - strand, within H281DRAFT_06370at 43.203 kb on + strand, within H281DRAFT_06370at 43.204 kb on - strand, within H281DRAFT_06370at 43.204 kb on - strand, within H281DRAFT_06370at 43.248 kb on + strand, within H281DRAFT_06370at 43.251 kb on + strand, within H281DRAFT_06370at 43.252 kb on - strand, within H281DRAFT_06370at 43.267 kb on + strand, within H281DRAFT_06370

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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41,713 - +1.2
41,785 + -1.2
41,786 - +0.2
41,786 - -1.1
41,845 - +0.0
41,845 - -0.1
41,855 + +0.2
41,856 - +0.9
42,386 + H281DRAFT_06369 0.61 +0.8
42,387 - H281DRAFT_06369 0.61 +0.5
42,765 + -1.9
42,912 - H281DRAFT_06370 0.11 -0.6
43,203 + H281DRAFT_06370 0.41 -0.3
43,204 - H281DRAFT_06370 0.41 +1.1
43,204 - H281DRAFT_06370 0.41 +0.0
43,248 + H281DRAFT_06370 0.46 +0.8
43,251 + H281DRAFT_06370 0.46 +0.9
43,252 - H281DRAFT_06370 0.46 -1.2
43,267 + H281DRAFT_06370 0.48 -1.7

Or see this region's nucleotide sequence