Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05197 and H281DRAFT_05198 overlap by 4 nucleotides H281DRAFT_05198 and H281DRAFT_05199 are separated by 218 nucleotides
H281DRAFT_05197: H281DRAFT_05197 - Multidrug efflux pump subunit AcrB, at 156,854 to 159,982
_05197
H281DRAFT_05198: H281DRAFT_05198 - RND family efflux transporter, MFP subunit, at 159,979 to 161,148
_05198
H281DRAFT_05199: H281DRAFT_05199 - transcriptional regulator, TetR family, at 161,367 to 161,984
_05199
Position (kb) 159
160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 159.031 kb on + strand, within H281DRAFT_05197 at 159.382 kb on + strand, within H281DRAFT_05197 at 159.389 kb on + strand, within H281DRAFT_05197 at 159.399 kb on + strand, within H281DRAFT_05197 at 159.528 kb on + strand, within H281DRAFT_05197 at 159.528 kb on + strand, within H281DRAFT_05197 at 159.528 kb on + strand, within H281DRAFT_05197 at 159.529 kb on - strand, within H281DRAFT_05197 at 159.541 kb on - strand, within H281DRAFT_05197 at 159.541 kb on - strand, within H281DRAFT_05197 at 159.631 kb on - strand, within H281DRAFT_05197 at 159.892 kb on + strand at 160.115 kb on + strand, within H281DRAFT_05198 at 160.116 kb on - strand at 160.346 kb on + strand, within H281DRAFT_05198 at 160.489 kb on + strand, within H281DRAFT_05198 at 160.490 kb on - strand, within H281DRAFT_05198 at 160.490 kb on - strand at 160.608 kb on - strand, within H281DRAFT_05198 at 160.608 kb on - strand, within H281DRAFT_05198 at 160.677 kb on - strand, within H281DRAFT_05198 at 160.763 kb on + strand, within H281DRAFT_05198 at 160.764 kb on - strand, within H281DRAFT_05198 at 160.767 kb on + strand, within H281DRAFT_05198 at 160.768 kb on - strand, within H281DRAFT_05198 at 160.768 kb on - strand, within H281DRAFT_05198 at 160.769 kb on + strand, within H281DRAFT_05198 at 160.769 kb on + strand, within H281DRAFT_05198 at 160.769 kb on + strand, within H281DRAFT_05198 at 160.978 kb on - strand, within H281DRAFT_05198 at 161.186 kb on - strand at 161.269 kb on + strand at 161.302 kb on + strand at 161.315 kb on + strand at 161.355 kb on - strand at 161.502 kb on + strand, within H281DRAFT_05199 at 161.502 kb on + strand, within H281DRAFT_05199 at 161.505 kb on - strand, within H281DRAFT_05199 at 161.560 kb on + strand, within H281DRAFT_05199 at 161.656 kb on - strand, within H281DRAFT_05199 at 161.658 kb on + strand, within H281DRAFT_05199 at 161.658 kb on + strand, within H281DRAFT_05199 at 161.659 kb on - strand, within H281DRAFT_05199 at 161.790 kb on + strand, within H281DRAFT_05199 at 161.892 kb on + strand, within H281DRAFT_05199 at 161.892 kb on + strand, within H281DRAFT_05199 at 161.894 kb on + strand, within H281DRAFT_05199 at 162.038 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 159,031 + H281DRAFT_05197 0.70 +0.3 159,382 + H281DRAFT_05197 0.81 -0.4 159,389 + H281DRAFT_05197 0.81 -0.5 159,399 + H281DRAFT_05197 0.81 +1.6 159,528 + H281DRAFT_05197 0.85 -0.6 159,528 + H281DRAFT_05197 0.85 -0.7 159,528 + H281DRAFT_05197 0.85 -0.8 159,529 - H281DRAFT_05197 0.85 -0.9 159,541 - H281DRAFT_05197 0.86 +0.1 159,541 - H281DRAFT_05197 0.86 +0.5 159,631 - H281DRAFT_05197 0.89 -0.3 159,892 + -0.7 160,115 + H281DRAFT_05198 0.12 -1.3 160,116 - -0.9 160,346 + H281DRAFT_05198 0.31 +0.4 160,489 + H281DRAFT_05198 0.44 +0.4 160,490 - H281DRAFT_05198 0.44 -0.7 160,490 - -2.4 160,608 - H281DRAFT_05198 0.54 -0.4 160,608 - H281DRAFT_05198 0.54 -1.1 160,677 - H281DRAFT_05198 0.60 -0.4 160,763 + H281DRAFT_05198 0.67 -1.8 160,764 - H281DRAFT_05198 0.67 -0.1 160,767 + H281DRAFT_05198 0.67 +0.2 160,768 - H281DRAFT_05198 0.67 +1.5 160,768 - H281DRAFT_05198 0.67 +0.5 160,769 + H281DRAFT_05198 0.68 -0.7 160,769 + H281DRAFT_05198 0.68 +0.7 160,769 + H281DRAFT_05198 0.68 -1.0 160,978 - H281DRAFT_05198 0.85 +0.2 161,186 - -3.2 161,269 + -0.5 161,302 + +0.3 161,315 + -0.4 161,355 - +0.3 161,502 + H281DRAFT_05199 0.22 +0.4 161,502 + H281DRAFT_05199 0.22 +0.7 161,505 - H281DRAFT_05199 0.22 -0.6 161,560 + H281DRAFT_05199 0.31 +0.4 161,656 - H281DRAFT_05199 0.47 -1.7 161,658 + H281DRAFT_05199 0.47 -0.5 161,658 + H281DRAFT_05199 0.47 +0.4 161,659 - H281DRAFT_05199 0.47 +0.7 161,790 + H281DRAFT_05199 0.68 +0.0 161,892 + H281DRAFT_05199 0.85 +0.1 161,892 + H281DRAFT_05199 0.85 -0.1 161,894 + H281DRAFT_05199 0.85 +0.1 162,038 - +0.3
Or see this region's nucleotide sequence