Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04532 and H281DRAFT_04533 overlap by 8 nucleotides H281DRAFT_04533 and H281DRAFT_04535 are separated by 120 nucleotides H281DRAFT_04535 and H281DRAFT_04536 are separated by 203 nucleotides
H281DRAFT_04532: H281DRAFT_04532 - two-component system, OmpR family, sensor histidine kinase KdpD, at 263,680 to 266,598
_04532
H281DRAFT_04533: H281DRAFT_04533 - two-component system, OmpR family, KDP operon response regulator KdpE, at 266,591 to 267,289
_04533
H281DRAFT_04535: H281DRAFT_04535 - quaternary ammonium compound-resistance protein SugE, at 267,410 to 267,730
_04535
H281DRAFT_04536: H281DRAFT_04536 - protein of unknown function (DUF4126), at 267,934 to 268,545
_04536
Position (kb) 266
267
268 Strain fitness (log2 ratio) -1
0
1
2 at 265.672 kb on + strand, within H281DRAFT_04532 at 265.940 kb on + strand, within H281DRAFT_04532 at 266.116 kb on + strand, within H281DRAFT_04532 at 266.376 kb on - strand at 267.171 kb on - strand, within H281DRAFT_04533 at 267.171 kb on - strand, within H281DRAFT_04533 at 267.171 kb on - strand, within H281DRAFT_04533 at 267.176 kb on + strand, within H281DRAFT_04533 at 267.188 kb on + strand at 267.188 kb on + strand, within H281DRAFT_04533 at 267.188 kb on + strand, within H281DRAFT_04533 at 267.189 kb on - strand, within H281DRAFT_04533 at 267.189 kb on - strand, within H281DRAFT_04533 at 267.190 kb on + strand, within H281DRAFT_04533 at 267.334 kb on - strand at 267.335 kb on + strand at 267.335 kb on + strand at 267.336 kb on - strand at 267.340 kb on - strand at 267.427 kb on - strand at 267.556 kb on + strand, within H281DRAFT_04535 at 267.780 kb on - strand at 267.788 kb on + strand at 268.051 kb on - strand, within H281DRAFT_04536 at 268.170 kb on + strand, within H281DRAFT_04536
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 265,672 + H281DRAFT_04532 0.68 -0.2 265,940 + H281DRAFT_04532 0.77 -0.7 266,116 + H281DRAFT_04532 0.83 +0.3 266,376 - +0.7 267,171 - H281DRAFT_04533 0.83 +0.3 267,171 - H281DRAFT_04533 0.83 +1.0 267,171 - H281DRAFT_04533 0.83 +0.4 267,176 + H281DRAFT_04533 0.84 -1.2 267,188 + +1.3 267,188 + H281DRAFT_04533 0.85 +0.9 267,188 + H281DRAFT_04533 0.85 +0.9 267,189 - H281DRAFT_04533 0.86 +1.1 267,189 - H281DRAFT_04533 0.86 -0.4 267,190 + H281DRAFT_04533 0.86 +0.9 267,334 - -1.4 267,335 + +0.2 267,335 + +0.7 267,336 - +0.8 267,340 - -0.2 267,427 - +2.2 267,556 + H281DRAFT_04535 0.45 -0.1 267,780 - +0.6 267,788 + +0.3 268,051 - H281DRAFT_04536 0.19 +0.3 268,170 + H281DRAFT_04536 0.39 +0.2
Or see this region's nucleotide sequence