Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04509

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04507 and H281DRAFT_04508 are separated by 48 nucleotidesH281DRAFT_04508 and H281DRAFT_04509 are separated by 46 nucleotidesH281DRAFT_04509 and H281DRAFT_04510 are separated by 61 nucleotidesH281DRAFT_04510 and H281DRAFT_04511 are separated by 189 nucleotides H281DRAFT_04507: H281DRAFT_04507 - phenylalanyl-tRNA synthetase beta subunit, at 238,341 to 240,776 _04507 H281DRAFT_04508: H281DRAFT_04508 - integration host factor subunit alpha, at 240,825 to 241,256 _04508 H281DRAFT_04509: H281DRAFT_04509 - transcriptional regulator, MerR family, at 241,303 to 241,716 _04509 H281DRAFT_04510: H281DRAFT_04510 - tRNA_Pro_GGG, at 241,778 to 241,854 _04510 H281DRAFT_04511: H281DRAFT_04511 - DNA-binding transcriptional regulator, LysR family, at 242,044 to 242,952 _04511 Position (kb) 241 242Strain fitness (log2 ratio) -2 -1 0 1 2 3at 240.841 kb on + strandat 240.841 kb on + strandat 240.845 kb on + strandat 240.845 kb on + strandat 240.845 kb on + strandat 240.845 kb on + strandat 240.845 kb on + strandat 241.382 kb on + strand, within H281DRAFT_04509at 241.383 kb on - strand, within H281DRAFT_04509at 241.428 kb on + strand, within H281DRAFT_04509at 241.468 kb on + strand, within H281DRAFT_04509at 241.471 kb on + strand, within H281DRAFT_04509at 241.471 kb on + strand, within H281DRAFT_04509at 241.471 kb on + strand, within H281DRAFT_04509at 241.472 kb on - strand, within H281DRAFT_04509at 241.519 kb on + strand, within H281DRAFT_04509at 241.519 kb on + strandat 241.520 kb on - strand, within H281DRAFT_04509at 241.723 kb on + strandat 241.741 kb on + strandat 241.804 kb on - strandat 241.875 kb on + strandat 241.875 kb on + strandat 241.875 kb on + strandat 241.876 kb on - strandat 241.876 kb on - strandat 241.876 kb on - strandat 241.876 kb on - strandat 241.913 kb on + strandat 241.913 kb on + strandat 241.971 kb on + strandat 241.971 kb on + strandat 241.971 kb on + strandat 241.972 kb on - strandat 241.972 kb on - strandat 241.972 kb on - strandat 241.972 kb on - strandat 242.328 kb on + strand, within H281DRAFT_04511at 242.339 kb on + strand, within H281DRAFT_04511at 242.340 kb on - strand, within H281DRAFT_04511at 242.344 kb on - strand, within H281DRAFT_04511at 242.373 kb on + strand, within H281DRAFT_04511at 242.419 kb on + strand, within H281DRAFT_04511at 242.420 kb on - strand, within H281DRAFT_04511at 242.420 kb on - strand, within H281DRAFT_04511at 242.422 kb on - strand, within H281DRAFT_04511at 242.539 kb on + strand, within H281DRAFT_04511

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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240,841 + +0.4
240,841 + +1.3
240,845 + +0.1
240,845 + +1.5
240,845 + +0.6
240,845 + +1.4
240,845 + +0.6
241,382 + H281DRAFT_04509 0.19 -2.2
241,383 - H281DRAFT_04509 0.19 -0.8
241,428 + H281DRAFT_04509 0.30 -2.3
241,468 + H281DRAFT_04509 0.40 -1.4
241,471 + H281DRAFT_04509 0.41 -0.6
241,471 + H281DRAFT_04509 0.41 -1.9
241,471 + H281DRAFT_04509 0.41 -0.2
241,472 - H281DRAFT_04509 0.41 -2.3
241,519 + H281DRAFT_04509 0.52 -1.7
241,519 + -0.7
241,520 - H281DRAFT_04509 0.52 -2.0
241,723 + +0.5
241,741 + +0.6
241,804 - +3.4
241,875 + +0.4
241,875 + +0.6
241,875 + -1.2
241,876 - -1.0
241,876 - +0.7
241,876 - +1.8
241,876 - +0.5
241,913 + +0.5
241,913 + +0.3
241,971 + +1.0
241,971 + +0.6
241,971 + -0.5
241,972 - +0.2
241,972 - +0.2
241,972 - -0.6
241,972 - +0.0
242,328 + H281DRAFT_04511 0.31 +0.5
242,339 + H281DRAFT_04511 0.32 -1.5
242,340 - H281DRAFT_04511 0.33 -0.5
242,344 - H281DRAFT_04511 0.33 +0.3
242,373 + H281DRAFT_04511 0.36 +0.8
242,419 + H281DRAFT_04511 0.41 +0.4
242,420 - H281DRAFT_04511 0.41 -0.4
242,420 - H281DRAFT_04511 0.41 +0.4
242,422 - H281DRAFT_04511 0.42 +0.4
242,539 + H281DRAFT_04511 0.54 +0.2

Or see this region's nucleotide sequence