Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04484

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04483 and H281DRAFT_04484 are separated by 37 nucleotidesH281DRAFT_04484 and H281DRAFT_04485 are separated by 240 nucleotides H281DRAFT_04483: H281DRAFT_04483 - tRNA-processing RNAse BN, at 213,825 to 215,135 _04483 H281DRAFT_04484: H281DRAFT_04484 - hypothetical protein, at 215,173 to 215,493 _04484 H281DRAFT_04485: H281DRAFT_04485 - Pimeloyl-ACP methyl ester carboxylesterase, at 215,734 to 216,567 _04485 Position (kb) 215 216Strain fitness (log2 ratio) -1 0 1 2 3at 214.300 kb on - strand, within H281DRAFT_04483at 214.413 kb on + strand, within H281DRAFT_04483at 214.413 kb on + strand, within H281DRAFT_04483at 214.420 kb on - strand, within H281DRAFT_04483at 214.420 kb on - strand, within H281DRAFT_04483at 214.512 kb on + strand, within H281DRAFT_04483at 214.516 kb on - strand, within H281DRAFT_04483at 214.537 kb on - strand, within H281DRAFT_04483at 214.590 kb on + strand, within H281DRAFT_04483at 214.590 kb on + strand, within H281DRAFT_04483at 214.591 kb on - strand, within H281DRAFT_04483at 214.591 kb on - strand, within H281DRAFT_04483at 214.591 kb on - strand, within H281DRAFT_04483at 214.755 kb on + strand, within H281DRAFT_04483at 214.923 kb on + strand, within H281DRAFT_04483at 215.133 kb on + strandat 215.134 kb on - strandat 215.175 kb on - strandat 215.191 kb on + strandat 215.232 kb on + strand, within H281DRAFT_04484at 215.232 kb on + strand, within H281DRAFT_04484at 215.235 kb on - strand, within H281DRAFT_04484at 215.435 kb on + strand, within H281DRAFT_04484at 215.435 kb on + strand, within H281DRAFT_04484at 215.435 kb on + strand, within H281DRAFT_04484at 215.436 kb on - strand, within H281DRAFT_04484at 215.444 kb on + strand, within H281DRAFT_04484at 215.484 kb on + strandat 215.838 kb on + strand, within H281DRAFT_04485at 215.839 kb on - strand, within H281DRAFT_04485at 215.839 kb on - strand, within H281DRAFT_04485at 215.839 kb on - strand, within H281DRAFT_04485at 215.839 kb on - strand, within H281DRAFT_04485at 215.976 kb on - strand, within H281DRAFT_04485at 215.979 kb on + strand, within H281DRAFT_04485at 215.979 kb on + strand, within H281DRAFT_04485at 215.980 kb on - strand, within H281DRAFT_04485at 215.980 kb on - strand, within H281DRAFT_04485at 215.980 kb on - strand, within H281DRAFT_04485at 216.434 kb on + strand, within H281DRAFT_04485at 216.434 kb on + strand, within H281DRAFT_04485at 216.454 kb on + strand, within H281DRAFT_04485at 216.455 kb on - strand, within H281DRAFT_04485at 216.459 kb on + strand, within H281DRAFT_04485at 216.459 kb on + strand, within H281DRAFT_04485

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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214,300 - H281DRAFT_04483 0.36 -0.3
214,413 + H281DRAFT_04483 0.45 -0.3
214,413 + H281DRAFT_04483 0.45 +0.9
214,420 - H281DRAFT_04483 0.45 -0.4
214,420 - H281DRAFT_04483 0.45 +0.8
214,512 + H281DRAFT_04483 0.52 -0.1
214,516 - H281DRAFT_04483 0.53 +2.8
214,537 - H281DRAFT_04483 0.54 -0.0
214,590 + H281DRAFT_04483 0.58 -0.3
214,590 + H281DRAFT_04483 0.58 +0.2
214,591 - H281DRAFT_04483 0.58 +1.2
214,591 - H281DRAFT_04483 0.58 +1.0
214,591 - H281DRAFT_04483 0.58 -0.4
214,755 + H281DRAFT_04483 0.71 +0.3
214,923 + H281DRAFT_04483 0.84 -0.9
215,133 + +0.2
215,134 - -0.2
215,175 - +1.1
215,191 + -1.1
215,232 + H281DRAFT_04484 0.18 +0.3
215,232 + H281DRAFT_04484 0.18 -0.3
215,235 - H281DRAFT_04484 0.19 -0.3
215,435 + H281DRAFT_04484 0.82 +0.0
215,435 + H281DRAFT_04484 0.82 -0.0
215,435 + H281DRAFT_04484 0.82 +1.0
215,436 - H281DRAFT_04484 0.82 -0.1
215,444 + H281DRAFT_04484 0.84 +1.0
215,484 + +0.6
215,838 + H281DRAFT_04485 0.12 +0.0
215,839 - H281DRAFT_04485 0.13 +0.0
215,839 - H281DRAFT_04485 0.13 -0.6
215,839 - H281DRAFT_04485 0.13 +0.2
215,839 - H281DRAFT_04485 0.13 -1.1
215,976 - H281DRAFT_04485 0.29 -1.0
215,979 + H281DRAFT_04485 0.29 -0.4
215,979 + H281DRAFT_04485 0.29 -0.0
215,980 - H281DRAFT_04485 0.29 +0.4
215,980 - H281DRAFT_04485 0.29 -0.4
215,980 - H281DRAFT_04485 0.29 +0.3
216,434 + H281DRAFT_04485 0.84 +0.2
216,434 + H281DRAFT_04485 0.84 -0.4
216,454 + H281DRAFT_04485 0.86 -0.7
216,455 - H281DRAFT_04485 0.86 -0.3
216,459 + H281DRAFT_04485 0.87 -0.1
216,459 + H281DRAFT_04485 0.87 +0.8

Or see this region's nucleotide sequence