Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03998

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03997 and H281DRAFT_03998 are separated by 546 nucleotidesH281DRAFT_03998 and H281DRAFT_03999 are separated by 572 nucleotides H281DRAFT_03997: H281DRAFT_03997 - DNA polymerase-3 subunit epsilon, at 101,333 to 102,484 _03997 H281DRAFT_03998: H281DRAFT_03998 - hypothetical protein, at 103,031 to 103,279 _03998 H281DRAFT_03999: H281DRAFT_03999 - porin, GBP family, at 103,852 to 104,997 _03999 Position (kb) 103 104Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 102.190 kb on + strand, within H281DRAFT_03997at 102.365 kb on + strand, within H281DRAFT_03997at 102.365 kb on + strand, within H281DRAFT_03997at 102.365 kb on + strand, within H281DRAFT_03997at 102.391 kb on + strandat 102.391 kb on + strandat 102.391 kb on + strandat 102.391 kb on + strandat 102.392 kb on - strandat 102.392 kb on - strandat 102.392 kb on - strandat 102.392 kb on - strandat 102.392 kb on - strandat 102.520 kb on + strandat 102.520 kb on + strandat 102.520 kb on + strandat 102.520 kb on + strandat 102.520 kb on + strandat 102.520 kb on + strandat 102.520 kb on + strandat 102.521 kb on - strandat 102.521 kb on - strandat 102.521 kb on - strandat 102.521 kb on - strandat 102.521 kb on - strandat 102.521 kb on - strandat 102.521 kb on - strandat 102.527 kb on + strandat 102.527 kb on + strandat 102.528 kb on - strandat 102.528 kb on - strandat 102.528 kb on - strandat 102.528 kb on - strandat 102.528 kb on - strandat 102.531 kb on + strandat 102.531 kb on + strandat 102.548 kb on + strandat 102.548 kb on + strandat 102.548 kb on + strandat 102.549 kb on - strandat 102.549 kb on - strandat 102.549 kb on - strandat 102.643 kb on + strandat 102.652 kb on + strandat 102.652 kb on + strandat 102.652 kb on + strandat 102.653 kb on - strandat 102.653 kb on - strandat 102.653 kb on - strandat 102.653 kb on - strandat 102.653 kb on - strandat 102.655 kb on - strandat 102.667 kb on + strandat 102.685 kb on + strandat 102.688 kb on + strandat 102.689 kb on - strandat 102.755 kb on + strandat 102.762 kb on + strandat 102.824 kb on - strandat 102.827 kb on + strandat 102.828 kb on - strandat 102.856 kb on + strandat 102.891 kb on + strandat 102.905 kb on + strandat 102.947 kb on + strandat 102.947 kb on + strandat 102.947 kb on + strandat 102.947 kb on + strandat 102.947 kb on + strandat 102.948 kb on - strandat 102.948 kb on - strandat 103.064 kb on - strand, within H281DRAFT_03998at 103.064 kb on - strand, within H281DRAFT_03998at 103.064 kb on - strand, within H281DRAFT_03998at 103.208 kb on + strand, within H281DRAFT_03998at 103.208 kb on + strand, within H281DRAFT_03998at 103.208 kb on + strand, within H281DRAFT_03998at 103.209 kb on - strand, within H281DRAFT_03998at 103.449 kb on + strandat 103.451 kb on + strandat 103.452 kb on - strandat 103.458 kb on + strandat 103.517 kb on - strandat 103.602 kb on - strandat 103.602 kb on - strandat 103.752 kb on - strandat 103.752 kb on - strandat 103.752 kb on - strandat 103.777 kb on + strandat 103.777 kb on + strandat 103.930 kb on + strandat 103.931 kb on - strandat 103.953 kb on + strandat 103.953 kb on + strandat 103.954 kb on - strandat 103.954 kb on - strandat 103.957 kb on + strandat 103.957 kb on + strandat 103.957 kb on + strandat 103.957 kb on + strandat 103.958 kb on - strandat 104.197 kb on + strand, within H281DRAFT_03999at 104.216 kb on - strand, within H281DRAFT_03999

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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102,190 + H281DRAFT_03997 0.74 +0.3
102,365 + H281DRAFT_03997 0.90 -0.2
102,365 + H281DRAFT_03997 0.90 +0.5
102,365 + H281DRAFT_03997 0.90 -0.2
102,391 + -0.8
102,391 + -0.5
102,391 + -0.3
102,391 + +0.3
102,392 - +0.3
102,392 - -0.0
102,392 - +0.6
102,392 - -1.3
102,392 - -2.1
102,520 + +0.6
102,520 + +0.7
102,520 + -0.1
102,520 + +0.4
102,520 + +0.4
102,520 + -0.7
102,520 + +0.2
102,521 - +0.2
102,521 - +0.8
102,521 - +0.2
102,521 - -0.0
102,521 - +0.4
102,521 - +0.2
102,521 - +0.3
102,527 + -0.2
102,527 + +0.2
102,528 - +0.4
102,528 - -0.1
102,528 - +0.8
102,528 - +0.3
102,528 - -1.4
102,531 + -0.6
102,531 + -0.3
102,548 + +0.4
102,548 + +0.4
102,548 + +0.1
102,549 - -0.5
102,549 - +0.5
102,549 - -0.3
102,643 + +0.0
102,652 + +0.3
102,652 + +0.3
102,652 + +0.5
102,653 - +0.1
102,653 - +0.5
102,653 - +1.1
102,653 - +0.1
102,653 - -0.2
102,655 - +1.2
102,667 + -0.3
102,685 + +0.2
102,688 + +1.0
102,689 - +2.4
102,755 + -0.0
102,762 + -0.4
102,824 - +1.0
102,827 + +0.8
102,828 - +0.7
102,856 + +1.3
102,891 + +0.3
102,905 + -1.5
102,947 + +0.7
102,947 + +0.8
102,947 + -0.7
102,947 + +0.9
102,947 + +0.1
102,948 - -0.2
102,948 - -0.1
103,064 - H281DRAFT_03998 0.13 +0.2
103,064 - H281DRAFT_03998 0.13 +0.3
103,064 - H281DRAFT_03998 0.13 +0.3
103,208 + H281DRAFT_03998 0.71 +0.2
103,208 + H281DRAFT_03998 0.71 +0.5
103,208 + H281DRAFT_03998 0.71 +1.2
103,209 - H281DRAFT_03998 0.71 -0.3
103,449 + -0.3
103,451 + +0.0
103,452 - -0.5
103,458 + -0.3
103,517 - -0.1
103,602 - -0.8
103,602 - -0.5
103,752 - -0.6
103,752 - -0.5
103,752 - -0.4
103,777 + -0.3
103,777 + -1.1
103,930 + +0.0
103,931 - +0.6
103,953 + -1.0
103,953 + +0.2
103,954 - -2.3
103,954 - -1.7
103,957 + -0.5
103,957 + -0.5
103,957 + -2.3
103,957 + -0.9
103,958 - -0.5
104,197 + H281DRAFT_03999 0.30 -0.6
104,216 - H281DRAFT_03999 0.32 -2.9

Or see this region's nucleotide sequence