Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03705 and H281DRAFT_03706 are separated by 82 nucleotides H281DRAFT_03706 and H281DRAFT_03707 are separated by 215 nucleotides
H281DRAFT_03705: H281DRAFT_03705 - transcriptional regulator, GntR family, at 218,804 to 220,135
_03705
H281DRAFT_03706: H281DRAFT_03706 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 220,218 to 220,853
_03706
H281DRAFT_03707: H281DRAFT_03707 - transcriptional regulator, IclR family, at 221,069 to 221,875
_03707
Position (kb) 220
221 Strain fitness (log2 ratio) -2
-1
0
1 at 219.463 kb on - strand, within H281DRAFT_03705 at 219.589 kb on - strand, within H281DRAFT_03705 at 219.990 kb on + strand, within H281DRAFT_03705 at 220.119 kb on + strand at 220.183 kb on - strand at 220.680 kb on + strand, within H281DRAFT_03706 at 220.744 kb on - strand, within H281DRAFT_03706 at 220.773 kb on + strand, within H281DRAFT_03706 at 220.773 kb on + strand, within H281DRAFT_03706 at 220.774 kb on - strand, within H281DRAFT_03706 at 220.929 kb on - strand at 220.994 kb on + strand at 220.996 kb on + strand at 220.996 kb on + strand at 220.996 kb on + strand at 220.997 kb on - strand at 221.516 kb on + strand, within H281DRAFT_03707 at 221.516 kb on + strand, within H281DRAFT_03707 at 221.517 kb on - strand, within H281DRAFT_03707 at 221.517 kb on - strand, within H281DRAFT_03707 at 221.520 kb on + strand, within H281DRAFT_03707 at 221.521 kb on - strand, within H281DRAFT_03707 at 221.521 kb on - strand, within H281DRAFT_03707 at 221.644 kb on - strand, within H281DRAFT_03707 at 221.644 kb on - strand, within H281DRAFT_03707 at 221.693 kb on + strand, within H281DRAFT_03707 at 221.693 kb on + strand, within H281DRAFT_03707 at 221.693 kb on + strand, within H281DRAFT_03707 at 221.694 kb on - strand, within H281DRAFT_03707 at 221.696 kb on + strand, within H281DRAFT_03707 at 221.707 kb on + strand, within H281DRAFT_03707 at 221.708 kb on - strand, within H281DRAFT_03707 at 221.718 kb on + strand, within H281DRAFT_03707 at 221.813 kb on + strand at 221.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 219,463 - H281DRAFT_03705 0.49 +0.3 219,589 - H281DRAFT_03705 0.59 +0.5 219,990 + H281DRAFT_03705 0.89 +0.9 220,119 + +0.7 220,183 - -0.1 220,680 + H281DRAFT_03706 0.73 -1.5 220,744 - H281DRAFT_03706 0.83 +0.1 220,773 + H281DRAFT_03706 0.87 +0.1 220,773 + H281DRAFT_03706 0.87 -0.1 220,774 - H281DRAFT_03706 0.87 -1.2 220,929 - -0.4 220,994 + -0.3 220,996 + +0.6 220,996 + +0.9 220,996 + +0.7 220,997 - -0.8 221,516 + H281DRAFT_03707 0.55 -1.3 221,516 + H281DRAFT_03707 0.55 -0.0 221,517 - H281DRAFT_03707 0.56 -2.2 221,517 - H281DRAFT_03707 0.56 -0.8 221,520 + H281DRAFT_03707 0.56 +1.3 221,521 - H281DRAFT_03707 0.56 -1.0 221,521 - H281DRAFT_03707 0.56 -0.2 221,644 - H281DRAFT_03707 0.71 -0.4 221,644 - H281DRAFT_03707 0.71 +1.2 221,693 + H281DRAFT_03707 0.77 -2.5 221,693 + H281DRAFT_03707 0.77 -0.1 221,693 + H281DRAFT_03707 0.77 -0.7 221,694 - H281DRAFT_03707 0.77 +0.1 221,696 + H281DRAFT_03707 0.78 +1.2 221,707 + H281DRAFT_03707 0.79 -0.6 221,708 - H281DRAFT_03707 0.79 -0.2 221,718 + H281DRAFT_03707 0.80 -0.2 221,813 + +0.2 221,814 - +0.4
Or see this region's nucleotide sequence