Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02607 and H281DRAFT_02608 are separated by 95 nucleotides H281DRAFT_02608 and H281DRAFT_02609 overlap by 4 nucleotides H281DRAFT_02609 and H281DRAFT_02610 are separated by 202 nucleotides
H281DRAFT_02607: H281DRAFT_02607 - protein of unknown function (DUF4148), at 184,189 to 184,497
_02607
H281DRAFT_02608: H281DRAFT_02608 - DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain, at 184,593 to 185,255
_02608
H281DRAFT_02609: H281DRAFT_02609 - two-component system, OmpR family, sensor kinase, at 185,252 to 186,583
_02609
H281DRAFT_02610: H281DRAFT_02610 - methyl-accepting chemotaxis sensory transducer with Cache sensor, at 186,786 to 188,342
_02610
Position (kb) 185
186
187 Strain fitness (log2 ratio) -1
0
1 at 184.519 kb on + strand at 184.666 kb on - strand, within H281DRAFT_02608 at 185.325 kb on - strand at 186.336 kb on + strand, within H281DRAFT_02609 at 186.336 kb on + strand, within H281DRAFT_02609 at 186.336 kb on + strand, within H281DRAFT_02609 at 186.337 kb on - strand, within H281DRAFT_02609 at 186.818 kb on - strand at 186.924 kb on - strand at 187.045 kb on - strand, within H281DRAFT_02610 at 187.055 kb on + strand, within H281DRAFT_02610 at 187.527 kb on + strand, within H281DRAFT_02610
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 184,519 + +1.0 184,666 - H281DRAFT_02608 0.11 -0.2 185,325 - +0.8 186,336 + H281DRAFT_02609 0.81 +0.2 186,336 + H281DRAFT_02609 0.81 +0.5 186,336 + H281DRAFT_02609 0.81 +0.4 186,337 - H281DRAFT_02609 0.81 +1.2 186,818 - +0.1 186,924 - +0.3 187,045 - H281DRAFT_02610 0.17 +0.6 187,055 + H281DRAFT_02610 0.17 +0.6 187,527 + H281DRAFT_02610 0.48 +0.3
Or see this region's nucleotide sequence