Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02491

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02490 and H281DRAFT_02491 are separated by 81 nucleotidesH281DRAFT_02491 and H281DRAFT_02492 are separated by 565 nucleotides H281DRAFT_02490: H281DRAFT_02490 - amidase, at 63,929 to 65,284 _02490 H281DRAFT_02491: H281DRAFT_02491 - excinuclease ABC subunit A, at 65,366 to 68,035 _02491 H281DRAFT_02492: H281DRAFT_02492 - Methyltransferase domain-containing protein, at 68,601 to 70,007 _02492 Position (kb) 65 66 67 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1at 64.488 kb on - strand, within H281DRAFT_02490at 64.488 kb on - strand, within H281DRAFT_02490at 64.952 kb on + strand, within H281DRAFT_02490at 65.335 kb on + strandat 65.336 kb on - strandat 65.351 kb on + strandat 65.351 kb on + strandat 65.352 kb on - strandat 65.456 kb on - strandat 65.725 kb on + strand, within H281DRAFT_02491at 65.725 kb on + strand, within H281DRAFT_02491at 65.771 kb on + strand, within H281DRAFT_02491at 65.772 kb on - strand, within H281DRAFT_02491at 65.864 kb on + strand, within H281DRAFT_02491at 65.865 kb on - strand, within H281DRAFT_02491at 65.987 kb on + strand, within H281DRAFT_02491at 66.165 kb on - strand, within H281DRAFT_02491at 66.175 kb on + strand, within H281DRAFT_02491at 66.224 kb on + strand, within H281DRAFT_02491at 66.397 kb on - strand, within H281DRAFT_02491at 66.505 kb on + strand, within H281DRAFT_02491at 66.603 kb on - strand, within H281DRAFT_02491at 66.701 kb on + strand, within H281DRAFT_02491at 66.701 kb on + strand, within H281DRAFT_02491at 66.701 kb on + strand, within H281DRAFT_02491at 66.702 kb on - strand, within H281DRAFT_02491at 66.702 kb on - strand, within H281DRAFT_02491at 66.890 kb on + strand, within H281DRAFT_02491at 66.891 kb on - strand, within H281DRAFT_02491at 66.891 kb on - strand, within H281DRAFT_02491at 67.025 kb on - strand, within H281DRAFT_02491at 67.028 kb on - strand, within H281DRAFT_02491at 67.316 kb on + strand, within H281DRAFT_02491at 67.316 kb on + strand, within H281DRAFT_02491at 67.382 kb on + strand, within H281DRAFT_02491at 67.518 kb on - strand, within H281DRAFT_02491at 67.518 kb on - strand, within H281DRAFT_02491at 67.518 kb on - strand, within H281DRAFT_02491at 67.520 kb on - strand, within H281DRAFT_02491at 67.520 kb on - strand, within H281DRAFT_02491at 67.695 kb on + strand, within H281DRAFT_02491at 67.764 kb on + strand, within H281DRAFT_02491at 67.766 kb on + strand, within H281DRAFT_02491at 67.766 kb on + strand, within H281DRAFT_02491at 67.766 kb on + strand, within H281DRAFT_02491at 67.766 kb on + strand, within H281DRAFT_02491at 67.766 kb on + strand, within H281DRAFT_02491at 67.766 kb on + strand, within H281DRAFT_02491at 67.766 kb on + strand, within H281DRAFT_02491at 67.766 kb on + strand, within H281DRAFT_02491at 67.766 kb on + strand, within H281DRAFT_02491at 67.766 kb on + strand, within H281DRAFT_02491at 67.766 kb on + strand, within H281DRAFT_02491at 67.766 kb on + strand, within H281DRAFT_02491at 67.766 kb on + strand, within H281DRAFT_02491at 67.767 kb on - strand, within H281DRAFT_02491at 67.767 kb on - strand, within H281DRAFT_02491at 67.767 kb on - strand, within H281DRAFT_02491at 67.767 kb on - strand, within H281DRAFT_02491at 67.767 kb on - strand, within H281DRAFT_02491at 67.767 kb on - strand, within H281DRAFT_02491at 67.767 kb on - strand, within H281DRAFT_02491at 67.767 kb on - strand, within H281DRAFT_02491at 67.767 kb on - strand, within H281DRAFT_02491at 67.819 kb on - strandat 68.154 kb on + strandat 68.155 kb on - strandat 68.155 kb on - strandat 68.268 kb on + strandat 68.268 kb on + strandat 68.571 kb on + strandat 68.572 kb on - strandat 68.580 kb on + strandat 68.581 kb on - strandat 68.585 kb on - strandat 68.598 kb on - strandat 68.605 kb on - strandat 68.712 kb on + strandat 68.712 kb on + strandat 68.712 kb on + strandat 68.712 kb on + strandat 68.712 kb on + strandat 68.712 kb on + strandat 68.713 kb on - strandat 68.713 kb on - strandat 68.714 kb on + strandat 68.900 kb on + strand, within H281DRAFT_02492at 68.967 kb on + strand, within H281DRAFT_02492

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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64,488 - H281DRAFT_02490 0.41 +0.6
64,488 - H281DRAFT_02490 0.41 -0.1
64,952 + H281DRAFT_02490 0.75 -0.8
65,335 + +0.7
65,336 - -0.0
65,351 + +1.1
65,351 + +0.0
65,352 - -0.1
65,456 - +0.5
65,725 + H281DRAFT_02491 0.13 +0.9
65,725 + H281DRAFT_02491 0.13 -0.7
65,771 + H281DRAFT_02491 0.15 +1.5
65,772 - H281DRAFT_02491 0.15 +0.5
65,864 + H281DRAFT_02491 0.19 -0.3
65,865 - H281DRAFT_02491 0.19 -0.3
65,987 + H281DRAFT_02491 0.23 +0.4
66,165 - H281DRAFT_02491 0.30 -0.2
66,175 + H281DRAFT_02491 0.30 -0.4
66,224 + H281DRAFT_02491 0.32 -0.0
66,397 - H281DRAFT_02491 0.39 +0.8
66,505 + H281DRAFT_02491 0.43 +0.9
66,603 - H281DRAFT_02491 0.46 +0.3
66,701 + H281DRAFT_02491 0.50 -0.4
66,701 + H281DRAFT_02491 0.50 +0.3
66,701 + H281DRAFT_02491 0.50 +0.8
66,702 - H281DRAFT_02491 0.50 +0.0
66,702 - H281DRAFT_02491 0.50 +0.4
66,890 + H281DRAFT_02491 0.57 +0.9
66,891 - H281DRAFT_02491 0.57 -0.3
66,891 - H281DRAFT_02491 0.57 -1.4
67,025 - H281DRAFT_02491 0.62 -0.2
67,028 - H281DRAFT_02491 0.62 -0.2
67,316 + H281DRAFT_02491 0.73 -0.6
67,316 + H281DRAFT_02491 0.73 +0.3
67,382 + H281DRAFT_02491 0.76 -1.2
67,518 - H281DRAFT_02491 0.81 +0.2
67,518 - H281DRAFT_02491 0.81 -0.9
67,518 - H281DRAFT_02491 0.81 +1.1
67,520 - H281DRAFT_02491 0.81 +1.0
67,520 - H281DRAFT_02491 0.81 +1.6
67,695 + H281DRAFT_02491 0.87 -0.5
67,764 + H281DRAFT_02491 0.90 -0.2
67,766 + H281DRAFT_02491 0.90 +0.0
67,766 + H281DRAFT_02491 0.90 +0.4
67,766 + H281DRAFT_02491 0.90 -0.8
67,766 + H281DRAFT_02491 0.90 -0.4
67,766 + H281DRAFT_02491 0.90 +0.8
67,766 + H281DRAFT_02491 0.90 -0.5
67,766 + H281DRAFT_02491 0.90 +0.7
67,766 + H281DRAFT_02491 0.90 +1.1
67,766 + H281DRAFT_02491 0.90 +1.2
67,766 + H281DRAFT_02491 0.90 +0.9
67,766 + H281DRAFT_02491 0.90 -0.7
67,766 + H281DRAFT_02491 0.90 +0.7
67,766 + H281DRAFT_02491 0.90 -0.5
67,767 - H281DRAFT_02491 0.90 -0.2
67,767 - H281DRAFT_02491 0.90 -1.5
67,767 - H281DRAFT_02491 0.90 +0.5
67,767 - H281DRAFT_02491 0.90 +0.0
67,767 - H281DRAFT_02491 0.90 +0.3
67,767 - H281DRAFT_02491 0.90 +0.5
67,767 - H281DRAFT_02491 0.90 +1.3
67,767 - H281DRAFT_02491 0.90 +0.2
67,767 - H281DRAFT_02491 0.90 +0.2
67,819 - -2.0
68,154 + -1.5
68,155 - +1.1
68,155 - -0.6
68,268 + -0.7
68,268 + -0.5
68,571 + +1.2
68,572 - +0.2
68,580 + -0.3
68,581 - +0.7
68,585 - +0.5
68,598 - -0.3
68,605 - -2.8
68,712 + -0.3
68,712 + +0.7
68,712 + +0.1
68,712 + +0.4
68,712 + -1.8
68,712 + +0.3
68,713 - -0.2
68,713 - -0.9
68,714 + -1.3
68,900 + H281DRAFT_02492 0.21 -0.6
68,967 + H281DRAFT_02492 0.26 -0.0

Or see this region's nucleotide sequence