Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02358

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02357 and H281DRAFT_02358 are separated by 241 nucleotidesH281DRAFT_02358 and H281DRAFT_02359 are separated by 139 nucleotidesH281DRAFT_02359 and H281DRAFT_02360 are separated by 413 nucleotides H281DRAFT_02357: H281DRAFT_02357 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 516,435 to 516,842 _02357 H281DRAFT_02358: H281DRAFT_02358 - GTPase, G3E family, at 517,084 to 518,400 _02358 H281DRAFT_02359: H281DRAFT_02359 - HU family DNA-binding protein, at 518,540 to 518,818 _02359 H281DRAFT_02360: H281DRAFT_02360 - tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein, at 519,232 to 521,211 _02360 Position (kb) 517 518 519Strain fitness (log2 ratio) -3 -2 -1 0 1at 516.186 kb on + strandat 516.186 kb on + strandat 516.186 kb on + strandat 516.186 kb on + strandat 516.186 kb on + strandat 516.187 kb on - strandat 516.187 kb on - strandat 516.187 kb on - strandat 516.187 kb on - strandat 516.187 kb on - strandat 516.195 kb on + strandat 516.195 kb on + strandat 516.196 kb on - strandat 516.199 kb on + strandat 516.199 kb on + strandat 516.199 kb on + strandat 516.200 kb on - strandat 516.230 kb on + strandat 516.230 kb on + strandat 516.230 kb on + strandat 516.231 kb on - strandat 516.231 kb on - strandat 516.231 kb on - strandat 516.353 kb on + strandat 516.353 kb on + strandat 516.364 kb on - strandat 516.364 kb on - strandat 516.431 kb on + strandat 516.431 kb on + strandat 516.489 kb on + strand, within H281DRAFT_02357at 516.489 kb on + strand, within H281DRAFT_02357at 516.489 kb on + strand, within H281DRAFT_02357at 516.490 kb on - strand, within H281DRAFT_02357at 516.588 kb on + strand, within H281DRAFT_02357at 516.637 kb on - strand, within H281DRAFT_02357at 516.681 kb on + strand, within H281DRAFT_02357at 516.681 kb on + strand, within H281DRAFT_02357at 516.681 kb on + strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.720 kb on + strand, within H281DRAFT_02357at 516.721 kb on - strand, within H281DRAFT_02357at 516.721 kb on - strand, within H281DRAFT_02357at 516.721 kb on - strand, within H281DRAFT_02357at 516.728 kb on + strand, within H281DRAFT_02357at 516.728 kb on + strand, within H281DRAFT_02357at 516.729 kb on - strand, within H281DRAFT_02357at 516.729 kb on - strand, within H281DRAFT_02357at 516.729 kb on - strand, within H281DRAFT_02357at 516.729 kb on - strand, within H281DRAFT_02357at 516.729 kb on - strand, within H281DRAFT_02357at 516.750 kb on + strand, within H281DRAFT_02357at 516.783 kb on + strand, within H281DRAFT_02357at 516.783 kb on + strand, within H281DRAFT_02357at 516.783 kb on + strand, within H281DRAFT_02357at 516.783 kb on + strand, within H281DRAFT_02357at 516.784 kb on - strand, within H281DRAFT_02357at 516.880 kb on + strandat 516.880 kb on + strandat 516.881 kb on - strandat 516.881 kb on - strandat 517.078 kb on - strandat 517.221 kb on + strand, within H281DRAFT_02358at 517.238 kb on + strand, within H281DRAFT_02358at 517.476 kb on + strand, within H281DRAFT_02358at 517.477 kb on - strand, within H281DRAFT_02358at 517.848 kb on + strand, within H281DRAFT_02358at 517.848 kb on + strand, within H281DRAFT_02358at 517.849 kb on - strand, within H281DRAFT_02358at 517.849 kb on - strand, within H281DRAFT_02358at 518.268 kb on - strand, within H281DRAFT_02358at 518.412 kb on + strandat 518.413 kb on - strandat 518.416 kb on - strandat 518.533 kb on - strandat 518.819 kb on + strandat 518.820 kb on - strandat 518.838 kb on + strandat 518.838 kb on + strandat 518.839 kb on - strandat 518.901 kb on + strandat 518.901 kb on + strandat 518.985 kb on + strandat 518.985 kb on + strandat 518.985 kb on + strandat 518.986 kb on - strandat 519.051 kb on + strandat 519.052 kb on - strandat 519.068 kb on - strandat 519.245 kb on + strandat 519.299 kb on - strandat 519.306 kb on + strandat 519.306 kb on + strandat 519.306 kb on + strandat 519.307 kb on - strandat 519.307 kb on - strandat 519.310 kb on + strandat 519.310 kb on + strandat 519.310 kb on + strandat 519.310 kb on + strandat 519.311 kb on - strandat 519.311 kb on - strandat 519.311 kb on - strandat 519.357 kb on - strandat 519.357 kb on - strandat 519.357 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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516,186 + -1.0
516,186 + -0.0
516,186 + -0.3
516,186 + -0.0
516,186 + +0.7
516,187 - +0.4
516,187 - +0.6
516,187 - -0.4
516,187 - -1.1
516,187 - +0.1
516,195 + +0.7
516,195 + -1.7
516,196 - +0.5
516,199 + -0.2
516,199 + -0.1
516,199 + +1.0
516,200 - -1.4
516,230 + +0.1
516,230 + -0.9
516,230 + -0.5
516,231 - +0.8
516,231 - +0.4
516,231 - -0.3
516,353 + +0.7
516,353 + -0.1
516,364 - -2.0
516,364 - -0.5
516,431 + -1.0
516,431 + -0.3
516,489 + H281DRAFT_02357 0.13 -0.3
516,489 + H281DRAFT_02357 0.13 -1.7
516,489 + H281DRAFT_02357 0.13 +0.2
516,490 - H281DRAFT_02357 0.13 +0.3
516,588 + H281DRAFT_02357 0.38 -0.3
516,637 - H281DRAFT_02357 0.50 +0.7
516,681 + H281DRAFT_02357 0.60 -0.2
516,681 + H281DRAFT_02357 0.60 +1.3
516,681 + H281DRAFT_02357 0.60 -0.6
516,682 - H281DRAFT_02357 0.61 -0.2
516,682 - H281DRAFT_02357 0.61 +0.2
516,682 - H281DRAFT_02357 0.61 +0.4
516,682 - H281DRAFT_02357 0.61 +0.2
516,682 - H281DRAFT_02357 0.61 -1.1
516,682 - H281DRAFT_02357 0.61 -0.2
516,682 - H281DRAFT_02357 0.61 +0.6
516,720 + H281DRAFT_02357 0.70 -0.6
516,721 - H281DRAFT_02357 0.70 +0.3
516,721 - H281DRAFT_02357 0.70 -0.3
516,721 - H281DRAFT_02357 0.70 -2.8
516,728 + H281DRAFT_02357 0.72 +0.7
516,728 + H281DRAFT_02357 0.72 +1.0
516,729 - H281DRAFT_02357 0.72 -0.1
516,729 - H281DRAFT_02357 0.72 +0.7
516,729 - H281DRAFT_02357 0.72 -0.8
516,729 - H281DRAFT_02357 0.72 +0.2
516,729 - H281DRAFT_02357 0.72 -0.4
516,750 + H281DRAFT_02357 0.77 +0.5
516,783 + H281DRAFT_02357 0.85 +0.0
516,783 + H281DRAFT_02357 0.85 +0.3
516,783 + H281DRAFT_02357 0.85 +1.3
516,783 + H281DRAFT_02357 0.85 +0.3
516,784 - H281DRAFT_02357 0.86 -0.7
516,880 + +1.0
516,880 + +0.0
516,881 - -0.5
516,881 - +0.2
517,078 - +0.8
517,221 + H281DRAFT_02358 0.10 -0.6
517,238 + H281DRAFT_02358 0.12 +0.2
517,476 + H281DRAFT_02358 0.30 -0.2
517,477 - H281DRAFT_02358 0.30 +0.1
517,848 + H281DRAFT_02358 0.58 +0.1
517,848 + H281DRAFT_02358 0.58 +1.2
517,849 - H281DRAFT_02358 0.58 -0.1
517,849 - H281DRAFT_02358 0.58 +0.1
518,268 - H281DRAFT_02358 0.90 +0.5
518,412 + -1.0
518,413 - +1.3
518,416 - -0.6
518,533 - -1.6
518,819 + -0.7
518,820 - -0.4
518,838 + +0.1
518,838 + -0.4
518,839 - -1.4
518,901 + -1.5
518,901 + -0.2
518,985 + -0.1
518,985 + -2.5
518,985 + +1.1
518,986 - -0.8
519,051 + +0.9
519,052 - -0.4
519,068 - +1.3
519,245 + -1.0
519,299 - -0.7
519,306 + +0.3
519,306 + -0.2
519,306 + -0.8
519,307 - -0.4
519,307 - +0.2
519,310 + -0.3
519,310 + +0.2
519,310 + -2.1
519,310 + -0.3
519,311 - +0.7
519,311 - -0.1
519,311 - +0.3
519,357 - -1.5
519,357 - -0.1
519,357 - -2.1

Or see this region's nucleotide sequence