Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01957

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01955 and H281DRAFT_01956 are separated by 94 nucleotidesH281DRAFT_01956 and H281DRAFT_01957 are separated by 57 nucleotidesH281DRAFT_01957 and H281DRAFT_01958 are separated by 194 nucleotides H281DRAFT_01955: H281DRAFT_01955 - hypothetical protein, at 74,680 to 75,309 _01955 H281DRAFT_01956: H281DRAFT_01956 - hypothetical protein, at 75,404 to 75,751 _01956 H281DRAFT_01957: H281DRAFT_01957 - Outer membrane protein (porin), at 75,809 to 76,450 _01957 H281DRAFT_01958: H281DRAFT_01958 - integrase/recombinase XerD, at 76,645 to 77,211 _01958 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.810 kb on + strand, within H281DRAFT_01955at 74.811 kb on - strand, within H281DRAFT_01955at 74.811 kb on - strand, within H281DRAFT_01955at 74.811 kb on - strand, within H281DRAFT_01955at 74.811 kb on - strand, within H281DRAFT_01955at 74.811 kb on - strand, within H281DRAFT_01955at 74.880 kb on + strand, within H281DRAFT_01955at 74.880 kb on + strand, within H281DRAFT_01955at 74.881 kb on - strand, within H281DRAFT_01955at 74.881 kb on - strand, within H281DRAFT_01955at 74.967 kb on + strand, within H281DRAFT_01955at 74.967 kb on + strand, within H281DRAFT_01955at 74.968 kb on - strand, within H281DRAFT_01955at 75.015 kb on + strand, within H281DRAFT_01955at 75.015 kb on + strand, within H281DRAFT_01955at 75.015 kb on + strand, within H281DRAFT_01955at 75.015 kb on + strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.016 kb on - strand, within H281DRAFT_01955at 75.017 kb on + strand, within H281DRAFT_01955at 75.026 kb on + strand, within H281DRAFT_01955at 75.026 kb on + strand, within H281DRAFT_01955at 75.027 kb on - strand, within H281DRAFT_01955at 75.090 kb on - strand, within H281DRAFT_01955at 75.090 kb on - strand, within H281DRAFT_01955at 75.156 kb on + strand, within H281DRAFT_01955at 75.157 kb on - strand, within H281DRAFT_01955at 75.196 kb on + strand, within H281DRAFT_01955at 75.196 kb on + strand, within H281DRAFT_01955at 75.298 kb on + strandat 75.298 kb on + strandat 75.298 kb on + strandat 75.298 kb on + strandat 75.299 kb on - strandat 75.299 kb on - strandat 75.299 kb on - strandat 75.299 kb on - strandat 75.320 kb on + strandat 75.320 kb on + strandat 75.320 kb on + strandat 75.320 kb on + strandat 75.351 kb on + strandat 75.352 kb on - strandat 75.352 kb on - strandat 75.399 kb on - strandat 75.399 kb on - strandat 75.425 kb on + strandat 75.469 kb on + strand, within H281DRAFT_01956at 75.504 kb on + strand, within H281DRAFT_01956at 75.516 kb on + strand, within H281DRAFT_01956at 75.516 kb on + strand, within H281DRAFT_01956at 75.516 kb on + strand, within H281DRAFT_01956at 75.517 kb on - strand, within H281DRAFT_01956at 75.517 kb on - strand, within H281DRAFT_01956at 75.517 kb on - strand, within H281DRAFT_01956at 75.517 kb on - strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.597 kb on + strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.598 kb on - strand, within H281DRAFT_01956at 75.912 kb on + strand, within H281DRAFT_01957at 75.912 kb on + strand, within H281DRAFT_01957at 75.912 kb on + strand, within H281DRAFT_01957at 75.912 kb on + strand, within H281DRAFT_01957at 75.912 kb on + strand, within H281DRAFT_01957at 75.913 kb on - strand, within H281DRAFT_01957at 75.913 kb on - strand, within H281DRAFT_01957at 75.919 kb on + strand, within H281DRAFT_01957at 75.919 kb on + strand, within H281DRAFT_01957at 75.919 kb on + strand, within H281DRAFT_01957at 75.919 kb on + strand, within H281DRAFT_01957at 75.919 kb on + strand, within H281DRAFT_01957at 75.920 kb on - strand, within H281DRAFT_01957at 75.920 kb on - strand, within H281DRAFT_01957at 75.920 kb on - strand, within H281DRAFT_01957at 75.920 kb on - strand, within H281DRAFT_01957at 75.939 kb on + strand, within H281DRAFT_01957at 75.940 kb on - strand, within H281DRAFT_01957at 76.020 kb on + strand, within H281DRAFT_01957at 76.023 kb on + strand, within H281DRAFT_01957at 76.023 kb on + strand, within H281DRAFT_01957at 76.023 kb on + strand, within H281DRAFT_01957at 76.024 kb on - strand, within H281DRAFT_01957at 76.024 kb on - strand, within H281DRAFT_01957at 76.024 kb on - strand, within H281DRAFT_01957at 76.044 kb on - strand, within H281DRAFT_01957at 76.044 kb on - strand, within H281DRAFT_01957at 76.117 kb on + strandat 76.117 kb on + strand, within H281DRAFT_01957at 76.165 kb on + strand, within H281DRAFT_01957at 76.183 kb on + strand, within H281DRAFT_01957at 76.183 kb on + strand, within H281DRAFT_01957at 76.183 kb on + strand, within H281DRAFT_01957at 76.184 kb on - strand, within H281DRAFT_01957at 76.184 kb on - strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.185 kb on + strand, within H281DRAFT_01957at 76.186 kb on - strand, within H281DRAFT_01957at 76.194 kb on + strand, within H281DRAFT_01957at 76.195 kb on - strand, within H281DRAFT_01957at 76.195 kb on - strand, within H281DRAFT_01957at 76.311 kb on + strand, within H281DRAFT_01957at 76.311 kb on + strand, within H281DRAFT_01957at 76.311 kb on + strand, within H281DRAFT_01957at 76.311 kb on + strand, within H281DRAFT_01957at 76.311 kb on + strand, within H281DRAFT_01957at 76.311 kb on + strand, within H281DRAFT_01957at 76.312 kb on - strand, within H281DRAFT_01957at 76.312 kb on - strand, within H281DRAFT_01957at 76.329 kb on + strand, within H281DRAFT_01957at 76.329 kb on + strand, within H281DRAFT_01957at 76.329 kb on + strand, within H281DRAFT_01957at 76.329 kb on + strand, within H281DRAFT_01957at 76.329 kb on + strand, within H281DRAFT_01957at 76.330 kb on - strand, within H281DRAFT_01957at 76.330 kb on - strand, within H281DRAFT_01957at 76.330 kb on - strand, within H281DRAFT_01957at 76.330 kb on - strandat 76.548 kb on + strandat 76.561 kb on + strandat 76.561 kb on + strandat 76.562 kb on - strandat 76.562 kb on - strandat 76.574 kb on + strandat 76.575 kb on - strandat 76.575 kb on - strandat 76.632 kb on + strandat 76.692 kb on + strandat 76.692 kb on + strandat 76.692 kb on + strandat 76.692 kb on + strandat 76.692 kb on + strandat 76.692 kb on + strandat 76.693 kb on - strandat 76.694 kb on + strandat 76.694 kb on + strandat 76.695 kb on - strandat 76.695 kb on - strandat 76.695 kb on - strandat 76.695 kb on - strandat 76.695 kb on - strandat 76.747 kb on + strand, within H281DRAFT_01958at 76.803 kb on + strand, within H281DRAFT_01958at 76.803 kb on + strand, within H281DRAFT_01958at 76.804 kb on - strand, within H281DRAFT_01958at 76.804 kb on - strand, within H281DRAFT_01958at 76.832 kb on + strand, within H281DRAFT_01958at 76.833 kb on - strand, within H281DRAFT_01958at 76.833 kb on - strand, within H281DRAFT_01958at 76.833 kb on - strand, within H281DRAFT_01958at 76.833 kb on - strandat 76.847 kb on + strand, within H281DRAFT_01958at 76.847 kb on + strand, within H281DRAFT_01958at 76.847 kb on + strandat 76.848 kb on - strand, within H281DRAFT_01958at 76.860 kb on + strand, within H281DRAFT_01958at 76.860 kb on + strand, within H281DRAFT_01958at 76.860 kb on + strand, within H281DRAFT_01958at 76.860 kb on + strand, within H281DRAFT_01958at 76.860 kb on + strand, within H281DRAFT_01958at 76.860 kb on + strand, within H281DRAFT_01958at 76.861 kb on - strand, within H281DRAFT_01958at 76.861 kb on - strand, within H281DRAFT_01958at 76.937 kb on + strand, within H281DRAFT_01958at 76.937 kb on + strand, within H281DRAFT_01958at 76.937 kb on + strand, within H281DRAFT_01958at 76.937 kb on + strand, within H281DRAFT_01958at 77.031 kb on + strandat 77.064 kb on + strandat 77.087 kb on - strand, within H281DRAFT_01958at 77.094 kb on + strand, within H281DRAFT_01958at 77.116 kb on + strand, within H281DRAFT_01958at 77.116 kb on + strand, within H281DRAFT_01958at 77.116 kb on + strand, within H281DRAFT_01958at 77.117 kb on - strand, within H281DRAFT_01958at 77.160 kb on - strandat 77.160 kb on - strandat 77.163 kb on + strandat 77.163 kb on + strandat 77.163 kb on + strandat 77.163 kb on + strandat 77.163 kb on + strandat 77.163 kb on + strandat 77.163 kb on + strandat 77.164 kb on - strandat 77.164 kb on - strandat 77.164 kb on - strandat 77.164 kb on - strandat 77.164 kb on - strandat 77.164 kb on - strandat 77.164 kb on - strandat 77.164 kb on - strandat 77.164 kb on - strandat 77.164 kb on - strandat 77.164 kb on - strandat 77.164 kb on - strandat 77.167 kb on + strandat 77.168 kb on - strandat 77.168 kb on - strandat 77.168 kb on - strandat 77.321 kb on - strandat 77.321 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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74,810 + H281DRAFT_01955 0.21 -0.8
74,810 + H281DRAFT_01955 0.21 +0.5
74,810 + H281DRAFT_01955 0.21 +0.2
74,810 + H281DRAFT_01955 0.21 -0.1
74,810 + H281DRAFT_01955 0.21 +0.7
74,810 + H281DRAFT_01955 0.21 +0.5
74,810 + H281DRAFT_01955 0.21 -1.2
74,811 - H281DRAFT_01955 0.21 -0.1
74,811 - H281DRAFT_01955 0.21 -1.4
74,811 - H281DRAFT_01955 0.21 -0.8
74,811 - H281DRAFT_01955 0.21 +0.9
74,811 - H281DRAFT_01955 0.21 -0.3
74,880 + H281DRAFT_01955 0.32 -0.1
74,880 + H281DRAFT_01955 0.32 +0.8
74,881 - H281DRAFT_01955 0.32 -0.2
74,881 - H281DRAFT_01955 0.32 -0.1
74,967 + H281DRAFT_01955 0.46 -0.1
74,967 + H281DRAFT_01955 0.46 +1.1
74,968 - H281DRAFT_01955 0.46 +0.6
75,015 + H281DRAFT_01955 0.53 +0.2
75,015 + H281DRAFT_01955 0.53 +0.9
75,015 + H281DRAFT_01955 0.53 +0.0
75,015 + H281DRAFT_01955 0.53 -1.5
75,016 - H281DRAFT_01955 0.53 +0.3
75,016 - H281DRAFT_01955 0.53 +0.4
75,016 - H281DRAFT_01955 0.53 +0.2
75,016 - H281DRAFT_01955 0.53 -1.3
75,016 - H281DRAFT_01955 0.53 -0.2
75,016 - H281DRAFT_01955 0.53 -0.6
75,017 + H281DRAFT_01955 0.53 +0.1
75,026 + H281DRAFT_01955 0.55 +0.3
75,026 + H281DRAFT_01955 0.55 +1.3
75,027 - H281DRAFT_01955 0.55 -0.4
75,090 - H281DRAFT_01955 0.65 +0.2
75,090 - H281DRAFT_01955 0.65 +0.4
75,156 + H281DRAFT_01955 0.76 +0.2
75,157 - H281DRAFT_01955 0.76 -0.0
75,196 + H281DRAFT_01955 0.82 +1.0
75,196 + H281DRAFT_01955 0.82 -1.4
75,298 + -0.5
75,298 + -0.6
75,298 + +0.3
75,298 + +0.3
75,299 - +1.5
75,299 - +0.4
75,299 - -0.1
75,299 - +1.2
75,320 + -0.0
75,320 + -0.0
75,320 + +0.2
75,320 + -0.2
75,351 + -0.8
75,352 - +0.8
75,352 - -0.1
75,399 - +0.6
75,399 - -0.2
75,425 + -0.9
75,469 + H281DRAFT_01956 0.19 -0.6
75,504 + H281DRAFT_01956 0.29 +0.1
75,516 + H281DRAFT_01956 0.32 +0.4
75,516 + H281DRAFT_01956 0.32 +0.0
75,516 + H281DRAFT_01956 0.32 +0.6
75,517 - H281DRAFT_01956 0.32 +0.4
75,517 - H281DRAFT_01956 0.32 +0.6
75,517 - H281DRAFT_01956 0.32 -0.2
75,517 - H281DRAFT_01956 0.32 -0.5
75,597 + H281DRAFT_01956 0.55 +0.6
75,597 + H281DRAFT_01956 0.55 +0.5
75,597 + H281DRAFT_01956 0.55 -1.5
75,597 + H281DRAFT_01956 0.55 +0.4
75,597 + H281DRAFT_01956 0.55 -0.6
75,597 + H281DRAFT_01956 0.55 -0.7
75,598 - H281DRAFT_01956 0.56 +0.6
75,598 - H281DRAFT_01956 0.56 +0.6
75,598 - H281DRAFT_01956 0.56 +0.5
75,598 - H281DRAFT_01956 0.56 +1.8
75,598 - H281DRAFT_01956 0.56 +0.3
75,598 - H281DRAFT_01956 0.56 +0.2
75,598 - H281DRAFT_01956 0.56 -0.4
75,598 - H281DRAFT_01956 0.56 +0.1
75,598 - H281DRAFT_01956 0.56 +0.8
75,598 - H281DRAFT_01956 0.56 -0.4
75,912 + H281DRAFT_01957 0.16 -0.6
75,912 + H281DRAFT_01957 0.16 -2.6
75,912 + H281DRAFT_01957 0.16 +0.7
75,912 + H281DRAFT_01957 0.16 -0.1
75,912 + H281DRAFT_01957 0.16 -0.2
75,913 - H281DRAFT_01957 0.16 -0.4
75,913 - H281DRAFT_01957 0.16 -0.4
75,919 + H281DRAFT_01957 0.17 -0.7
75,919 + H281DRAFT_01957 0.17 -0.1
75,919 + H281DRAFT_01957 0.17 -0.9
75,919 + H281DRAFT_01957 0.17 -0.8
75,919 + H281DRAFT_01957 0.17 -0.8
75,920 - H281DRAFT_01957 0.17 -1.8
75,920 - H281DRAFT_01957 0.17 +0.2
75,920 - H281DRAFT_01957 0.17 +0.3
75,920 - H281DRAFT_01957 0.17 +1.4
75,939 + H281DRAFT_01957 0.20 -0.6
75,940 - H281DRAFT_01957 0.20 +0.4
76,020 + H281DRAFT_01957 0.33 +0.2
76,023 + H281DRAFT_01957 0.33 +0.5
76,023 + H281DRAFT_01957 0.33 +0.9
76,023 + H281DRAFT_01957 0.33 +0.1
76,024 - H281DRAFT_01957 0.33 +0.8
76,024 - H281DRAFT_01957 0.33 -0.4
76,024 - H281DRAFT_01957 0.33 +0.4
76,044 - H281DRAFT_01957 0.37 -0.1
76,044 - H281DRAFT_01957 0.37 -0.2
76,117 + -0.4
76,117 + H281DRAFT_01957 0.48 +0.8
76,165 + H281DRAFT_01957 0.55 -1.0
76,183 + H281DRAFT_01957 0.58 +0.1
76,183 + H281DRAFT_01957 0.58 +0.6
76,183 + H281DRAFT_01957 0.58 +0.4
76,184 - H281DRAFT_01957 0.58 +0.2
76,184 - H281DRAFT_01957 0.58 -0.2
76,185 + H281DRAFT_01957 0.59 -0.1
76,185 + H281DRAFT_01957 0.59 -0.3
76,185 + H281DRAFT_01957 0.59 -0.3
76,185 + H281DRAFT_01957 0.59 -0.1
76,185 + H281DRAFT_01957 0.59 +0.4
76,185 + H281DRAFT_01957 0.59 -0.5
76,186 - H281DRAFT_01957 0.59 -0.8
76,194 + H281DRAFT_01957 0.60 +0.1
76,195 - H281DRAFT_01957 0.60 +1.1
76,195 - H281DRAFT_01957 0.60 -1.0
76,311 + H281DRAFT_01957 0.78 -0.1
76,311 + H281DRAFT_01957 0.78 -0.2
76,311 + H281DRAFT_01957 0.78 +0.1
76,311 + H281DRAFT_01957 0.78 -0.6
76,311 + H281DRAFT_01957 0.78 -0.2
76,311 + H281DRAFT_01957 0.78 +0.0
76,312 - H281DRAFT_01957 0.78 +0.0
76,312 - H281DRAFT_01957 0.78 +1.2
76,329 + H281DRAFT_01957 0.81 -0.4
76,329 + H281DRAFT_01957 0.81 +0.2
76,329 + H281DRAFT_01957 0.81 +0.2
76,329 + H281DRAFT_01957 0.81 -0.4
76,329 + H281DRAFT_01957 0.81 +2.0
76,330 - H281DRAFT_01957 0.81 -0.0
76,330 - H281DRAFT_01957 0.81 -0.4
76,330 - H281DRAFT_01957 0.81 -0.4
76,330 - +0.5
76,548 + +0.2
76,561 + -0.1
76,561 + -0.6
76,562 - +0.3
76,562 - -1.6
76,574 + -1.3
76,575 - +0.2
76,575 - -1.2
76,632 + +0.2
76,692 + +0.3
76,692 + -0.1
76,692 + +1.1
76,692 + +0.1
76,692 + -0.3
76,692 + +0.1
76,693 - -0.5
76,694 + -0.3
76,694 + +0.4
76,695 - +0.3
76,695 - -1.1
76,695 - +0.3
76,695 - +0.3
76,695 - +0.3
76,747 + H281DRAFT_01958 0.18 +1.0
76,803 + H281DRAFT_01958 0.28 +0.0
76,803 + H281DRAFT_01958 0.28 +0.3
76,804 - H281DRAFT_01958 0.28 -0.8
76,804 - H281DRAFT_01958 0.28 -0.5
76,832 + H281DRAFT_01958 0.33 -1.7
76,833 - H281DRAFT_01958 0.33 -0.1
76,833 - H281DRAFT_01958 0.33 +0.4
76,833 - H281DRAFT_01958 0.33 +0.0
76,833 - +2.0
76,847 + H281DRAFT_01958 0.36 +0.6
76,847 + H281DRAFT_01958 0.36 -0.4
76,847 + -0.3
76,848 - H281DRAFT_01958 0.36 -1.7
76,860 + H281DRAFT_01958 0.38 -1.3
76,860 + H281DRAFT_01958 0.38 +0.9
76,860 + H281DRAFT_01958 0.38 +0.4
76,860 + H281DRAFT_01958 0.38 -0.1
76,860 + H281DRAFT_01958 0.38 -1.5
76,860 + H281DRAFT_01958 0.38 -0.4
76,861 - H281DRAFT_01958 0.38 -0.1
76,861 - H281DRAFT_01958 0.38 +0.5
76,937 + H281DRAFT_01958 0.51 +1.2
76,937 + H281DRAFT_01958 0.51 -0.2
76,937 + H281DRAFT_01958 0.51 -1.1
76,937 + H281DRAFT_01958 0.51 +0.4
77,031 + +1.4
77,064 + +0.7
77,087 - H281DRAFT_01958 0.78 +0.5
77,094 + H281DRAFT_01958 0.79 -0.7
77,116 + H281DRAFT_01958 0.83 -1.2
77,116 + H281DRAFT_01958 0.83 -0.7
77,116 + H281DRAFT_01958 0.83 +0.2
77,117 - H281DRAFT_01958 0.83 +0.7
77,160 - -0.1
77,160 - -0.2
77,163 + +0.7
77,163 + -0.5
77,163 + +0.0
77,163 + +0.8
77,163 + -0.4
77,163 + +0.3
77,163 + -0.5
77,164 - -0.2
77,164 - -0.4
77,164 - +0.6
77,164 - -0.0
77,164 - -0.6
77,164 - -0.5
77,164 - +0.2
77,164 - +0.1
77,164 - +0.6
77,164 - -0.3
77,164 - -0.2
77,164 - +0.0
77,167 + +1.0
77,168 - -0.2
77,168 - -0.4
77,168 - +0.5
77,321 - +0.7
77,321 - -0.2

Or see this region's nucleotide sequence