Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01651 and H281DRAFT_01652 are separated by 3 nucleotides H281DRAFT_01652 and H281DRAFT_01653 are separated by 160 nucleotides
H281DRAFT_01651: H281DRAFT_01651 - vanillate O-demethylase ferredoxin subunit, at 533,437 to 534,405
_01651
H281DRAFT_01652: H281DRAFT_01652 - DNA-binding transcriptional regulator, LysR family, at 534,409 to 535,329
_01652
H281DRAFT_01653: H281DRAFT_01653 - Phenylpropionate dioxygenase, large terminal subunit, at 535,490 to 536,773
_01653
Position (kb) 534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 533.542 kb on + strand, within H281DRAFT_01651 at 533.596 kb on + strand, within H281DRAFT_01651 at 533.596 kb on + strand, within H281DRAFT_01651 at 533.775 kb on - strand, within H281DRAFT_01651 at 533.796 kb on + strand at 533.858 kb on - strand, within H281DRAFT_01651 at 534.013 kb on + strand, within H281DRAFT_01651 at 534.366 kb on - strand at 534.402 kb on - strand at 534.602 kb on - strand, within H281DRAFT_01652 at 534.661 kb on - strand, within H281DRAFT_01652 at 534.811 kb on + strand, within H281DRAFT_01652 at 534.811 kb on + strand, within H281DRAFT_01652 at 534.812 kb on - strand, within H281DRAFT_01652 at 534.816 kb on - strand, within H281DRAFT_01652 at 534.837 kb on + strand, within H281DRAFT_01652 at 534.838 kb on - strand, within H281DRAFT_01652 at 534.914 kb on - strand, within H281DRAFT_01652 at 535.473 kb on - strand at 535.505 kb on + strand at 535.506 kb on - strand at 535.571 kb on + strand at 536.123 kb on + strand, within H281DRAFT_01653
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 533,542 + H281DRAFT_01651 0.11 -0.6 533,596 + H281DRAFT_01651 0.16 -1.2 533,596 + H281DRAFT_01651 0.16 -0.3 533,775 - H281DRAFT_01651 0.35 +0.5 533,796 + -1.3 533,858 - H281DRAFT_01651 0.43 -1.2 534,013 + H281DRAFT_01651 0.59 +0.0 534,366 - -0.1 534,402 - -0.2 534,602 - H281DRAFT_01652 0.21 +2.7 534,661 - H281DRAFT_01652 0.27 -0.1 534,811 + H281DRAFT_01652 0.44 -0.1 534,811 + H281DRAFT_01652 0.44 -0.0 534,812 - H281DRAFT_01652 0.44 +1.4 534,816 - H281DRAFT_01652 0.44 +0.4 534,837 + H281DRAFT_01652 0.46 -1.0 534,838 - H281DRAFT_01652 0.47 +0.2 534,914 - H281DRAFT_01652 0.55 -0.4 535,473 - -3.2 535,505 + -0.2 535,506 - -2.3 535,571 + -1.1 536,123 + H281DRAFT_01653 0.49 +0.5
Or see this region's nucleotide sequence