Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00141

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00139 and H281DRAFT_00140 are separated by 46 nucleotidesH281DRAFT_00140 and H281DRAFT_00141 overlap by 16 nucleotidesH281DRAFT_00141 and H281DRAFT_00142 are separated by 45 nucleotides H281DRAFT_00139: H281DRAFT_00139 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, at 144,892 to 145,953 _00139 H281DRAFT_00140: H281DRAFT_00140 - cobalamin-5'-phosphate synthase, at 146,000 to 146,785 _00140 H281DRAFT_00141: H281DRAFT_00141 - alpha-ribazole phosphatase, at 146,770 to 147,360 _00141 H281DRAFT_00142: H281DRAFT_00142 - iron complex transport system substrate-binding protein, at 147,406 to 148,326 _00142 Position (kb) 146 147 148Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 145.801 kb on + strand, within H281DRAFT_00139at 145.824 kb on - strand, within H281DRAFT_00139at 145.997 kb on + strandat 145.998 kb on - strandat 145.998 kb on - strandat 145.998 kb on - strandat 145.999 kb on + strandat 146.000 kb on - strandat 146.000 kb on - strandat 146.059 kb on - strandat 146.081 kb on + strand, within H281DRAFT_00140at 146.082 kb on - strand, within H281DRAFT_00140at 146.094 kb on - strand, within H281DRAFT_00140at 146.162 kb on + strand, within H281DRAFT_00140at 146.162 kb on + strand, within H281DRAFT_00140at 146.469 kb on - strand, within H281DRAFT_00140at 146.486 kb on + strand, within H281DRAFT_00140at 146.487 kb on - strand, within H281DRAFT_00140at 146.548 kb on - strand, within H281DRAFT_00140at 146.678 kb on + strand, within H281DRAFT_00140at 146.753 kb on + strandat 146.754 kb on - strandat 146.754 kb on - strandat 146.760 kb on + strandat 146.886 kb on - strand, within H281DRAFT_00141at 146.886 kb on - strand, within H281DRAFT_00141at 146.886 kb on - strand, within H281DRAFT_00141at 147.199 kb on + strand, within H281DRAFT_00141at 147.200 kb on - strand, within H281DRAFT_00141at 147.200 kb on - strand, within H281DRAFT_00141at 147.389 kb on - strandat 147.531 kb on + strand, within H281DRAFT_00142at 147.716 kb on - strand, within H281DRAFT_00142at 147.738 kb on + strand, within H281DRAFT_00142at 147.738 kb on + strand, within H281DRAFT_00142at 147.738 kb on + strandat 147.845 kb on + strand, within H281DRAFT_00142at 147.955 kb on + strand, within H281DRAFT_00142at 147.955 kb on + strand, within H281DRAFT_00142at 147.956 kb on - strand, within H281DRAFT_00142at 148.017 kb on + strand, within H281DRAFT_00142at 148.018 kb on - strand, within H281DRAFT_00142at 148.126 kb on + strand, within H281DRAFT_00142at 148.190 kb on - strand, within H281DRAFT_00142at 148.346 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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145,801 + H281DRAFT_00139 0.86 -0.9
145,824 - H281DRAFT_00139 0.88 -0.6
145,997 + -1.0
145,998 - +0.6
145,998 - -0.7
145,998 - +0.0
145,999 + -0.6
146,000 - -0.1
146,000 - -1.1
146,059 - -0.4
146,081 + H281DRAFT_00140 0.10 -1.8
146,082 - H281DRAFT_00140 0.10 -3.0
146,094 - H281DRAFT_00140 0.12 -0.4
146,162 + H281DRAFT_00140 0.21 -0.8
146,162 + H281DRAFT_00140 0.21 -0.8
146,469 - H281DRAFT_00140 0.60 -2.1
146,486 + H281DRAFT_00140 0.62 -0.6
146,487 - H281DRAFT_00140 0.62 -3.5
146,548 - H281DRAFT_00140 0.70 -4.5
146,678 + H281DRAFT_00140 0.86 -0.0
146,753 + -1.7
146,754 - -3.2
146,754 - -3.3
146,760 + -0.4
146,886 - H281DRAFT_00141 0.20 -0.9
146,886 - H281DRAFT_00141 0.20 -1.0
146,886 - H281DRAFT_00141 0.20 +0.2
147,199 + H281DRAFT_00141 0.73 -1.6
147,200 - H281DRAFT_00141 0.73 +0.1
147,200 - H281DRAFT_00141 0.73 -0.4
147,389 - +0.1
147,531 + H281DRAFT_00142 0.14 +0.3
147,716 - H281DRAFT_00142 0.34 +0.2
147,738 + H281DRAFT_00142 0.36 -0.8
147,738 + H281DRAFT_00142 0.36 +1.2
147,738 + +1.1
147,845 + H281DRAFT_00142 0.48 -0.2
147,955 + H281DRAFT_00142 0.60 +0.6
147,955 + H281DRAFT_00142 0.60 -0.2
147,956 - H281DRAFT_00142 0.60 +0.3
148,017 + H281DRAFT_00142 0.66 -2.3
148,018 - H281DRAFT_00142 0.66 -0.7
148,126 + H281DRAFT_00142 0.78 -0.6
148,190 - H281DRAFT_00142 0.85 -0.1
148,346 + +0.1

Or see this region's nucleotide sequence