Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01108

Experiment: PYE_noCalcium 25C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep2 28 days
1,211,669	+		CCNA_01105	0.57	+0.3
1,211,681	+		CCNA_01105	0.59	-1.7
1,211,700	+		CCNA_01105	0.61	-1.8
1,211,700	+		CCNA_01105	0.61	-0.5
1,211,715	+				-0.8
1,211,718	-		CCNA_01105	0.63	+0.9
1,211,718	-		CCNA_01105	0.63	+1.5
1,211,723	-		CCNA_01105	0.64	-1.8
1,211,723	-		CCNA_01105	0.64	-0.7
1,211,760	-		CCNA_01105	0.68	-0.1
1,211,760	-		CCNA_01105	0.68	-2.1
1,211,762	+		CCNA_01105	0.68	+0.8
1,211,795	-		CCNA_01105	0.72	+0.3
1,211,797	+		CCNA_01105	0.72	+0.2
1,211,804	+		CCNA_01105	0.73	-0.4
1,211,805	-		CCNA_01105	0.73	-1.2
1,211,805	-		CCNA_01105	0.73	+1.5
1,211,805	-		CCNA_01105	0.73	-0.5
1,211,811	-		CCNA_01105	0.74	-0.7
1,211,836	+		CCNA_01105	0.77	+4.1
1,211,836	+		CCNA_01105	0.77	-0.4
1,211,836	+		CCNA_01105	0.77	-2.2
1,211,836	+		CCNA_01105	0.77	-0.9
1,211,873	+		CCNA_01105	0.81	+0.6
1,211,892	-		CCNA_01105	0.83	-1.3
1,211,917	+		CCNA_01105	0.86	+0.3
1,211,925	-		CCNA_01105	0.87	-1.7
1,211,930	-		CCNA_01105	0.87	-0.5
1,211,940	-		CCNA_01105	0.88	-0.3
1,211,956	+				+0.5
1,211,966	+				-0.6
1,211,979	+				+0.3
1,211,988	+				+2.1
1,211,988	+				+0.5
1,211,996	-				-0.6
1,211,996	-				+1.1
1,212,101	+				-1.5
1,212,126	+		CCNA_01106	0.10	-0.1
1,212,126	+		CCNA_01106	0.10	-0.2
1,212,126	+		CCNA_01106	0.10	+0.9
1,212,126	+		CCNA_01106	0.10	+0.7
1,212,126	+		CCNA_01106	0.10	-0.1
1,212,134	-		CCNA_01106	0.13	-2.8
1,212,155	+		CCNA_01106	0.21	+0.6
1,212,172	+		CCNA_01106	0.27	+0.4
1,212,182	+		CCNA_01106	0.31	+1.7
1,212,182	+		CCNA_01106	0.31	+1.1
1,212,182	+		CCNA_01106	0.31	+0.9
1,212,182	+		CCNA_01106	0.31	+0.6
1,212,182	+		CCNA_01106	0.31	-1.0
1,212,182	+		CCNA_01106	0.31	+0.0
1,212,182	+		CCNA_01106	0.31	-2.7
1,212,182	+		CCNA_01106	0.31	+0.1
1,212,190	-		CCNA_01106	0.34	-0.3
1,212,190	-		CCNA_01106	0.34	-0.2
1,212,190	-		CCNA_01106	0.34	-0.9
1,212,190	-		CCNA_01106	0.34	-2.0
1,212,190	-		CCNA_01106	0.34	-0.4
1,212,190	-		CCNA_01106	0.34	-0.8
1,212,190	-		CCNA_01106	0.34	+0.9
1,212,190	-		CCNA_01106	0.34	+1.2
1,212,256	+		CCNA_01106	0.58	-2.7
1,212,256	+		CCNA_01106	0.58	+1.3
1,212,264	-		CCNA_01106	0.61	+0.5
1,212,264	-		CCNA_01106	0.61	-1.9
1,212,264	-		CCNA_01106	0.61	+0.2
1,212,269	-		CCNA_01106	0.63	-2.4
1,212,276	+		CCNA_01106	0.66	+0.7
1,212,279	-		CCNA_01106	0.67	-0.3
1,212,284	-		CCNA_01106	0.69	+0.5
1,212,323	+				-1.4
1,212,342	-				-0.6
1,212,358	+				+1.0
1,212,405	+		CCNA_01107	0.15	-2.2
1,212,413	-		CCNA_01107	0.19	-1.5
1,212,422	+		CCNA_01107	0.23	+1.7
1,212,422	+		CCNA_01107	0.23	-1.3
1,212,422	+		CCNA_01107	0.23	-1.0
1,212,422	+		CCNA_01107	0.23	-0.7
1,212,422	+		CCNA_01107	0.23	+3.5
1,212,422	+		CCNA_01107	0.23	+4.8
1,212,427	+		CCNA_01107	0.25	+1.1
1,212,430	-		CCNA_01107	0.26	-1.0
1,212,430	-		CCNA_01107	0.26	-0.3
1,212,432	+		CCNA_01107	0.27	-0.0
1,212,437	+		CCNA_01107	0.30	+0.2
1,212,451	-		CCNA_01107	0.36	+0.9
1,212,451	-		CCNA_01107	0.36	-1.0
1,212,451	-		CCNA_01107	0.36	-1.6
1,212,474	+		CCNA_01107	0.47	-2.7
1,212,487	+		CCNA_01107	0.53	+1.1
1,212,528	-		CCNA_01107	0.71	+1.5
1,212,529	-		CCNA_01107	0.72	-0.5
1,212,587	-				-0.1
1,212,590	+				-0.5
1,212,591	+				-1.0
1,212,591	+				-0.6
1,212,602	+				+0.2
1,212,616	+				-2.6
1,212,618	-				-1.9
1,212,647	+				+0.1
1,212,655	-				-0.1
1,212,662	+				-1.9
1,212,683	-				+0.5
1,212,701	-				+1.5
1,212,732	-				+2.2
1,212,760	+		CCNA_01108	0.13	+1.4
1,212,760	+		CCNA_01108	0.13	+0.0
1,212,760	+		CCNA_01108	0.13	-1.7
1,212,768	-		CCNA_01108	0.14	-1.0
1,212,768	-		CCNA_01108	0.14	-0.5
1,212,817	-		CCNA_01108	0.19	-2.3
1,212,856	-		CCNA_01108	0.24	+0.7
1,212,858	+		CCNA_01108	0.24	+2.5
1,212,869	+		CCNA_01108	0.25	+0.6
1,212,905	-		CCNA_01108	0.30	+0.2
1,212,999	+		CCNA_01108	0.40	-0.1
1,213,003	+		CCNA_01108	0.41	-0.0
1,213,007	-		CCNA_01108	0.41	+1.7
1,213,020	+		CCNA_01108	0.43	+2.5
1,213,038	-		CCNA_01108	0.45	+0.2
1,213,043	-		CCNA_01108	0.46	-1.0
1,213,048	-		CCNA_01108	0.46	+0.4
1,213,077	-		CCNA_01108	0.49	+0.1
1,213,079	+		CCNA_01108	0.50	-0.5
1,213,082	-		CCNA_01108	0.50	+0.8
1,213,082	-		CCNA_01108	0.50	+1.2
1,213,090	+		CCNA_01108	0.51	-0.7
1,213,104	-		CCNA_01108	0.53	+0.1
1,213,105	+		CCNA_01108	0.53	-1.8
1,213,105	-		CCNA_01108	0.53	+1.6
1,213,125	-		CCNA_01108	0.55	+1.2
1,213,143	+		CCNA_01108	0.57	-1.6
1,213,150	+		CCNA_01108	0.58	+1.5
1,213,173	-		CCNA_01108	0.61	-0.1
1,213,173	-		CCNA_01108	0.61	+2.8
1,213,194	+		CCNA_01108	0.63	-0.3
1,213,229	+		CCNA_01108	0.67	+0.3
1,213,229	+		CCNA_01108	0.67	+1.9
1,213,229	+		CCNA_01108	0.67	+0.1
1,213,234	+		CCNA_01108	0.68	+0.5
1,213,234	+		CCNA_01108	0.68	-2.1
1,213,234	+		CCNA_01108	0.68	+0.2
1,213,234	+		CCNA_01108	0.68	+1.6
1,213,237	-		CCNA_01108	0.68	+2.2
1,213,237	-		CCNA_01108	0.68	+1.7
1,213,239	+		CCNA_01108	0.68	-0.1
1,213,240	+		CCNA_01108	0.68	+0.2
1,213,240	+		CCNA_01108	0.68	+0.0
1,213,240	+		CCNA_01108	0.68	+0.3
1,213,240	+		CCNA_01108	0.68	+1.5
1,213,240	+		CCNA_01108	0.68	-0.9
1,213,242	-		CCNA_01108	0.69	+0.9
1,213,242	-		CCNA_01108	0.69	-0.5
1,213,242	-		CCNA_01108	0.69	+1.3
1,213,242	-		CCNA_01108	0.69	+1.9
1,213,242	-		CCNA_01108	0.69	+1.0
1,213,242	-		CCNA_01108	0.69	+1.5
1,213,242	-		CCNA_01108	0.69	+0.2
1,213,242	-		CCNA_01108	0.69	+1.0
1,213,242	-		CCNA_01108	0.69	+1.3
1,213,248	-		CCNA_01108	0.69	+0.4
1,213,248	-		CCNA_01108	0.69	+0.3
1,213,248	-		CCNA_01108	0.69	-1.7
1,213,248	-		CCNA_01108	0.69	+1.1
1,213,248	-		CCNA_01108	0.69	+1.2
1,213,248	-		CCNA_01108	0.69	+0.4
1,213,248	-		CCNA_01108	0.69	+1.9
1,213,275	-		CCNA_01108	0.72	+0.4
1,213,275	-		CCNA_01108	0.72	+0.3
1,213,280	+		CCNA_01108	0.73	-0.1
1,213,297	-		CCNA_01108	0.75	+1.1
1,213,311	+		CCNA_01108	0.77	+0.3
1,213,404	+		CCNA_01108	0.87	-0.4
1,213,404	+		CCNA_01108	0.87	-0.2
1,213,407	-		CCNA_01108	0.88	+0.7
1,213,407	-		CCNA_01108	0.88	+0.5
1,213,409	+		CCNA_01108	0.88	-1.0
1,213,409	+		CCNA_01108	0.88	-2.6
1,213,409	+		CCNA_01108	0.88	-0.7
1,213,412	-		CCNA_01108	0.88	+0.2
1,213,417	-		CCNA_01108	0.89	+1.5
1,213,417	-		CCNA_01108	0.89	+0.5
1,213,417	-		CCNA_01108	0.89	+0.9
1,213,424	-		CCNA_01108	0.90	+1.6
1,213,445	-				+1.3
1,213,445	-				+1.8
1,213,449	+				-1.0
1,213,457	-				+0.0
1,213,472	-				-0.1
1,213,480	+				+0.5
1,213,483	-				+1.4
1,213,483	-				-0.1
1,213,485	+				-0.8
1,213,488	-				+0.1
1,213,493	-				+0.4
1,213,493	-				+0.5
1,213,503	-				+1.1
1,213,518	+				+0.2
1,213,541	+				-1.1
1,213,549	-				-1.6
1,213,549	-				+1.5
1,213,549	-				+0.3
1,213,566	+				+0.2
1,213,567	+				-1.5
1,213,575	-				+1.3
1,213,599	+				-0.7
1,213,599	+				-0.8
1,213,608	-				-1.1
1,213,697	+		CCNA_R0026	0.19	-1.7
1,213,697	+		CCNA_R0026	0.19	+0.2
1,213,777	+				-0.0
1,213,777	+				+0.7
1,213,781	+				+0.5
1,213,907	-				-1.1
1,213,964	+				-1.7
1,213,977	+				-0.1
1,213,977	+				+0.8
1,213,985	-				-1.4
1,214,008	+				+0.7
1,214,018	+				+5.5
1,214,040	-				+2.5
1,214,049	+				-1.8
1,214,049	+				+0.5
1,214,106	+				+4.5
1,214,114	+				+0.6
1,214,131	-				+0.2
1,214,205	+		CCNA_01109	0.13	+1.4
1,214,205	+		CCNA_01109	0.13	-0.9
1,214,213	-		CCNA_01109	0.13	+1.5
1,214,234	-		CCNA_01109	0.14	-2.3
1,214,234	-		CCNA_01109	0.14	+2.5
1,214,261	-		CCNA_01109	0.16	+1.1
1,214,286	+		CCNA_01109	0.17	-1.0
1,214,289	-		CCNA_01109	0.17	+1.6
1,214,294	-		CCNA_01109	0.17	-2.4
1,214,296	+		CCNA_01109	0.18	-0.4
1,214,296	+		CCNA_01109	0.18	-2.3
1,214,296	+		CCNA_01109	0.18	-1.5
1,214,309	-		CCNA_01109	0.18	+0.9
1,214,374	+		CCNA_01109	0.22	+1.5
1,214,374	+		CCNA_01109	0.22	-3.1
1,214,382	-		CCNA_01109	0.22	-2.2
1,214,382	-		CCNA_01109	0.22	-1.3
1,214,382	-		CCNA_01109	0.22	-1.3
1,214,382	-				+0.0
1,214,393	+		CCNA_01109	0.23	+2.1
1,214,408	-		CCNA_01109	0.24	+1.5
1,214,408	-		CCNA_01109	0.24	-1.5
1,214,408	-		CCNA_01109	0.24	-1.0
1,214,439	+		CCNA_01109	0.26	-0.4
1,214,439	+		CCNA_01109	0.26	-3.3
1,214,439	+		CCNA_01109	0.26	-0.7
1,214,447	-		CCNA_01109	0.26	-1.8
1,214,447	-		CCNA_01109	0.26	+1.2
1,214,503	+		CCNA_01109	0.29	-0.1