Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01100

Experiment: PYE_noCalcium 25C survival rep2 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep2 28 days
1,204,382	-		CCNA_01099	0.23	+3.2
1,204,412	-		CCNA_01099	0.26	+0.7
1,204,518	+		CCNA_01099	0.35	-0.7
1,204,526	-		CCNA_01099	0.35	+2.0
1,204,536	-		CCNA_01099	0.36	+1.2
1,204,536	-		CCNA_01099	0.36	+0.6
1,204,586	+		CCNA_01099	0.40	-2.0
1,204,620	+		CCNA_01099	0.43	+0.3
1,204,624	+		CCNA_01099	0.43	+0.2
1,204,659	-		CCNA_01099	0.46	+0.9
1,204,676	+		CCNA_01099	0.48	-1.1
1,204,683	+		CCNA_01099	0.48	+4.5
1,204,690	+		CCNA_01099	0.49	+0.9
1,204,698	-		CCNA_01099	0.50	+0.8
1,204,708	+		CCNA_01099	0.51	+2.5
1,204,731	-		CCNA_01099	0.52	+2.2
1,204,785	+		CCNA_01099	0.57	-1.2
1,204,793	-		CCNA_01099	0.58	+0.4
1,204,801	+		CCNA_01099	0.58	-1.4
1,204,803	+		CCNA_01099	0.59	+0.9
1,204,803	+		CCNA_01099	0.59	+2.5
1,204,829	-		CCNA_01099	0.61	+0.8
1,204,839	-		CCNA_01099	0.62	+0.8
1,204,841	+		CCNA_01099	0.62	-0.3
1,204,844	-		CCNA_01099	0.62	-0.3
1,204,854	-		CCNA_01099	0.63	+0.5
1,204,867	-		CCNA_01099	0.64	+0.1
1,204,881	+		CCNA_01099	0.65	-0.5
1,204,894	-		CCNA_01099	0.66	+0.0
1,204,894	-		CCNA_01099	0.66	+0.7
1,204,940	+		CCNA_01099	0.70	-1.3
1,204,950	+		CCNA_01099	0.71	-0.1
1,205,009	-		CCNA_01099	0.76	+2.2
1,205,029	-		CCNA_01099	0.77	+0.2
1,205,035	+		CCNA_01099	0.78	+0.5
1,205,036	+		CCNA_01099	0.78	-1.5
1,205,036	+		CCNA_01099	0.78	-1.0
1,205,044	-		CCNA_01099	0.79	+0.1
1,205,066	-		CCNA_01099	0.81	+0.7
1,205,071	-		CCNA_01099	0.81	+0.1
1,205,071	-		CCNA_01099	0.81	+1.6
1,205,128	+		CCNA_01099	0.86	-0.3
1,205,128	+		CCNA_01099	0.86	+0.5
1,205,136	-		CCNA_01099	0.86	+2.5
1,205,141	-		CCNA_01099	0.87	+0.5
1,205,150	-		CCNA_01099	0.88	+1.3
1,205,247	+				-0.4
1,205,247	+				-1.0
1,205,247	+				+0.1
1,205,255	-				-0.8
1,205,314	-				+2.5
1,205,316	-				+1.0
1,205,413	-				+0.9
1,205,420	-				+1.7
1,205,454	-				+0.3
1,205,487	+				+1.5
1,205,505	-				-2.5
1,205,516	+				+0.7
1,205,519	-				-0.7
1,205,521	+				-1.2
1,205,524	-				+0.4
1,205,528	+				+0.5
1,205,536	-				-0.6
1,205,580	+		CCNA_01100	0.11	-0.4
1,205,622	-		CCNA_01100	0.13	+1.8
1,205,622	-		CCNA_01100	0.13	+0.4
1,205,631	-		CCNA_01100	0.14	-0.4
1,205,631	-		CCNA_01100	0.14	+0.1
1,205,655	+		CCNA_01100	0.15	-0.3
1,205,730	-		CCNA_01100	0.19	+0.1
1,205,730	-		CCNA_01100	0.19	-0.4
1,205,738	+		CCNA_01100	0.19	+2.5
1,205,753	+		CCNA_01100	0.20	-0.3
1,205,757	-		CCNA_01100	0.20	-0.2
1,205,761	-		CCNA_01100	0.21	+0.4
1,205,761	-		CCNA_01100	0.21	+0.2
1,205,766	-		CCNA_01100	0.21	+3.0
1,205,773	+		CCNA_01100	0.21	-1.0
1,205,776	-		CCNA_01100	0.21	+0.8
1,205,908	+		CCNA_01100	0.28	+0.6
1,205,927	-		CCNA_01100	0.29	-0.5
1,205,930	+		CCNA_01100	0.29	+1.0
1,205,944	+		CCNA_01100	0.30	-0.1
1,205,944	+		CCNA_01100	0.30	-1.5
1,205,944	+		CCNA_01100	0.30	-1.4
1,205,944	+		CCNA_01100	0.30	-0.1
1,205,952	-		CCNA_01100	0.31	+0.5
1,205,952	-		CCNA_01100	0.31	+1.5
1,205,952	-		CCNA_01100	0.31	-0.5
1,205,952	-		CCNA_01100	0.31	+0.8
1,205,971	+		CCNA_01100	0.32	+1.1
1,205,971	-		CCNA_01100	0.32	+0.5
1,205,976	+		CCNA_01100	0.32	-0.2
1,205,976	+		CCNA_01100	0.32	-1.2
1,205,976	+		CCNA_01100	0.32	+0.2
1,205,976	+		CCNA_01100	0.32	-1.2
1,205,976	+		CCNA_01100	0.32	-0.8
1,205,984	-		CCNA_01100	0.32	-0.1
1,205,984	-		CCNA_01100	0.32	+0.6
1,205,984	-		CCNA_01100	0.32	+0.4
1,205,984	-		CCNA_01100	0.32	+0.1
1,205,990	+		CCNA_01100	0.33	+1.0
1,205,990	+		CCNA_01100	0.33	-0.5
1,205,990	+		CCNA_01100	0.33	+0.1
1,205,990	+		CCNA_01100	0.33	-0.5
1,205,990	+		CCNA_01100	0.33	-0.8
1,205,990	+		CCNA_01100	0.33	+1.5
1,205,990	+		CCNA_01100	0.33	-0.2
1,205,990	+		CCNA_01100	0.33	-1.5
1,205,998	-		CCNA_01100	0.33	+1.3
1,205,998	-		CCNA_01100	0.33	+0.7
1,206,011	+		CCNA_01100	0.34	+0.4
1,206,032	+		CCNA_01100	0.35	+0.3
1,206,042	-		CCNA_01100	0.35	+0.1
1,206,053	-		CCNA_01100	0.36	+0.3
1,206,087	+		CCNA_01100	0.38	-0.0
1,206,097	+		CCNA_01100	0.38	-0.3
1,206,097	+		CCNA_01100	0.38	+0.6
1,206,113	+		CCNA_01100	0.39	-1.2
1,206,113	+		CCNA_01100	0.39	+3.2
1,206,133	+		CCNA_01100	0.40	-0.6
1,206,145	-		CCNA_01100	0.41	+0.6
1,206,156	+		CCNA_01100	0.41	-2.3
1,206,156	+		CCNA_01100	0.41	-0.0
1,206,173	+		CCNA_01100	0.42	-1.6
1,206,176	-		CCNA_01100	0.42	-0.5
1,206,181	-		CCNA_01100	0.42	+0.5
1,206,181	-		CCNA_01100	0.42	+0.6
1,206,181	-		CCNA_01100	0.42	+0.5
1,206,183	+		CCNA_01100	0.43	-0.1
1,206,191	-		CCNA_01100	0.43	+1.9
1,206,191	-		CCNA_01100	0.43	+1.3
1,206,230	-		CCNA_01100	0.45	+0.3
1,206,247	-		CCNA_01100	0.46	+0.7
1,206,301	+		CCNA_01100	0.49	-0.7
1,206,330	+		CCNA_01100	0.50	+0.5
1,206,377	+		CCNA_01100	0.53	+2.5
1,206,377	+		CCNA_01100	0.53	+0.9
1,206,378	+				-2.0
1,206,385	-		CCNA_01100	0.53	+2.1
1,206,386	-		CCNA_01100	0.53	+1.8
1,206,403	+		CCNA_01100	0.54	+0.9
1,206,442	+		CCNA_01100	0.56	-0.1
1,206,457	+		CCNA_01100	0.57	+1.9
1,206,465	-		CCNA_01100	0.57	+1.3
1,206,475	-		CCNA_01100	0.58	+1.2
1,206,485	-		CCNA_01100	0.58	+0.8
1,206,530	-		CCNA_01100	0.60	-0.8
1,206,537	+		CCNA_01100	0.61	-3.6
1,206,537	+		CCNA_01100	0.61	-1.9
1,206,537	+		CCNA_01100	0.61	+0.2
1,206,545	-		CCNA_01100	0.61	+0.4
1,206,580	+		CCNA_01100	0.63	+0.9
1,206,580	+		CCNA_01100	0.63	-0.5
1,206,601	-		CCNA_01100	0.64	+0.3
1,206,649	+		CCNA_01100	0.67	-1.4
1,206,657	-		CCNA_01100	0.67	-1.3
1,206,657	-		CCNA_01100	0.67	+0.8
1,206,659	-		CCNA_01100	0.67	+0.2
1,206,667	+		CCNA_01100	0.68	+0.9
1,206,679	-		CCNA_01100	0.68	+0.8
1,206,685	+		CCNA_01100	0.69	-0.7
1,206,709	+		CCNA_01100	0.70	-0.6
1,206,727	-		CCNA_01100	0.71	-1.3
1,206,762	+		CCNA_01100	0.73	-0.1
1,206,771	-		CCNA_01100	0.73	-1.1
1,206,834	-		CCNA_01100	0.76	+0.1
1,206,878	-		CCNA_01100	0.79	-0.1
1,206,883	-		CCNA_01100	0.79	+0.8
1,206,883	-		CCNA_01100	0.79	+0.6
1,206,883	-		CCNA_01100	0.79	+1.7
1,206,911	+		CCNA_01100	0.80	+0.5
1,206,920	+		CCNA_01100	0.81	+0.2
1,206,925	+		CCNA_01100	0.81	+0.3
1,206,962	-		CCNA_01100	0.83	+1.0
1,206,975	+		CCNA_01100	0.84	-2.1
1,206,983	-		CCNA_01100	0.84	+1.4
1,206,983	-		CCNA_01100	0.84	-1.3
1,206,993	-		CCNA_01100	0.84	-1.1
1,207,023	+		CCNA_01100	0.86	-0.3
1,207,035	-		CCNA_01100	0.87	-0.2
1,207,036	-		CCNA_01100	0.87	+1.2
1,207,065	-		CCNA_01100	0.88	+1.2
1,207,069	-		CCNA_01100	0.88	-0.0
1,207,080	-		CCNA_01100	0.89	+0.9
1,207,082	+		CCNA_01100	0.89	-0.7
1,207,111	+				-0.1
1,207,161	-				+0.3
1,207,271	-				+0.1
1,207,299	+				-0.8
1,207,303	+				-1.0
1,207,311	+				+1.8
1,207,319	-				+0.6
1,207,322	+				+0.9
1,207,328	+				-0.4
1,207,328	+				+0.9
1,207,328	+				-1.0
1,207,336	-				-0.8
1,207,336	-				-1.8
1,207,336	-				+0.9
1,207,336	-				+3.3
1,207,360	-				-0.8
1,207,402	+				+0.5
1,207,415	+				+2.5
1,207,415	+				-0.1
1,207,415	+				+0.2
1,207,423	-				+1.7
1,207,423	-				+1.2
1,207,423	-				+1.2
1,207,423	-				+0.8
1,207,423	-				+1.2
1,208,033	-				-0.8
1,208,057	-				-3.2
1,208,068	+				+1.5
1,208,073	+				+1.2
1,208,081	-				-0.6
1,208,081	-				+1.2
1,208,081	-				-1.4
1,208,153	-				-1.3
1,208,195	+				+1.3
1,208,204	-				-2.1
1,208,257	-				+0.2
1,208,268	+				+0.9
1,208,277	-		CCNA_01102	0.10	+0.8