Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00806

Experiment: PYE_noCalcium 25C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00804 and CCNA_00805 are separated by 229 nucleotidesCCNA_00805 and CCNA_00806 overlap by 1 nucleotidesCCNA_00806 and CCNA_00807 are separated by 7 nucleotidesCCNA_00807 and CCNA_00808 are separated by 93 nucleotidesCCNA_00808 and CCNA_00809 are separated by 279 nucleotides CCNA_00804: CCNA_00804 - ASC-1 homology domain protein, at 868,374 to 868,859 _00804 CCNA_00805: CCNA_00805 - GTP-binding protein YihA, at 869,089 to 869,778 _00805 CCNA_00806: CCNA_00806 - inner membrane protein translocase component yidC, at 869,778 to 871,625 _00806 CCNA_00807: CCNA_00807 - ribonuclease P protein component, at 871,633 to 872,082 _00807 CCNA_00808: CCNA_00808 - LSU ribosomal protein L34P, at 872,176 to 872,310 _00808 CCNA_00809: CCNA_00809 - quinone oxidoreductase, at 872,590 to 873,585 _00809 Position (kb) 869 870 871 872Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 868.797 kb on + strand, within CCNA_00804at 868.797 kb on + strand, within CCNA_00804at 868.797 kb on + strand, within CCNA_00804at 868.805 kb on - strand, within CCNA_00804at 868.836 kb on + strandat 868.847 kb on - strandat 868.900 kb on + strandat 868.917 kb on - strandat 868.987 kb on + strandat 868.990 kb on - strandat 868.992 kb on + strandat 868.995 kb on + strandat 869.004 kb on - strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.017 kb on - strandat 869.017 kb on - strandat 869.017 kb on - strandat 869.017 kb on - strandat 869.107 kb on - strandat 869.696 kb on + strand, within CCNA_00805at 869.704 kb on - strand, within CCNA_00805at 869.758 kb on - strandat 869.830 kb on - strandat 869.847 kb on - strandat 871.683 kb on - strand, within CCNA_00807at 871.762 kb on - strand, within CCNA_00807at 871.762 kb on - strand, within CCNA_00807at 872.398 kb on + strandat 872.417 kb on + strandat 872.424 kb on - strandat 872.424 kb on - strandat 872.425 kb on - strandat 872.425 kb on - strandat 872.425 kb on - strandat 872.425 kb on - strandat 872.425 kb on - strandat 872.425 kb on - strandat 872.435 kb on + strandat 872.435 kb on + strandat 872.443 kb on - strandat 872.473 kb on + strandat 872.478 kb on + strandat 872.502 kb on + strandat 872.526 kb on - strandat 872.567 kb on + strandat 872.614 kb on - strandat 872.614 kb on - strandat 872.618 kb on + strandat 872.619 kb on - strandat 872.619 kb on - strandat 872.624 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep2 28 days
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868,797 + CCNA_00804 0.87 +0.1
868,797 + CCNA_00804 0.87 +0.5
868,797 + CCNA_00804 0.87 -1.0
868,805 - CCNA_00804 0.89 +0.3
868,836 + +2.0
868,847 - +1.1
868,900 + +0.7
868,917 - +0.7
868,987 + +0.2
868,990 - +1.4
868,992 + -0.5
868,995 + +0.1
869,004 - +0.8
869,009 + +0.8
869,009 + +0.5
869,009 + +0.6
869,009 + +0.5
869,009 + +2.5
869,009 + -2.3
869,009 + -2.3
869,017 - -1.7
869,017 - +0.2
869,017 - -0.8
869,017 - -0.4
869,107 - +1.2
869,696 + CCNA_00805 0.88 -2.5
869,704 - CCNA_00805 0.89 -2.0
869,758 - +0.3
869,830 - -0.1
869,847 - +0.8
871,683 - CCNA_00807 0.11 -0.5
871,762 - CCNA_00807 0.29 +0.5
871,762 - CCNA_00807 0.29 +0.1
872,398 + -1.0
872,417 + -2.2
872,424 - -0.9
872,424 - +1.6
872,425 - -1.4
872,425 - +0.5
872,425 - +0.4
872,425 - +0.9
872,425 - -0.7
872,425 - +1.5
872,435 + -0.3
872,435 + -2.9
872,443 - -2.2
872,473 + -0.1
872,478 + -0.5
872,502 + -1.8
872,526 - +2.5
872,567 + +2.5
872,614 - -0.5
872,614 - +0.7
872,618 + -0.7
872,619 - -0.6
872,619 - +0.8
872,624 - +1.5

Or see this region's nucleotide sequence