Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3076

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3075 and DvMF_3076 overlap by 8 nucleotidesDvMF_3076 and DvMF_3077 are separated by 703 nucleotides DvMF_3075: DvMF_3075 - signal transduction histidine kinase regulating citrate/malate metabolism (RefSeq), at 3,883,575 to 3,884,486 _3075 DvMF_3076: DvMF_3076 - metal dependent phosphohydrolase (RefSeq), at 3,884,479 to 3,885,705 _3076 DvMF_3077: DvMF_3077 - Colicin V production protein (RefSeq), at 3,886,409 to 3,886,885 _3077 Position (kb) 3884 3885 3886Strain fitness (log2 ratio) -2 -1 0 1at 3883.647 kb on + strandat 3883.647 kb on + strandat 3883.680 kb on + strand, within DvMF_3075at 3883.849 kb on - strand, within DvMF_3075at 3883.862 kb on - strand, within DvMF_3075at 3883.956 kb on + strand, within DvMF_3075at 3883.987 kb on - strand, within DvMF_3075at 3884.450 kb on + strandat 3884.566 kb on + strandat 3884.649 kb on - strand, within DvMF_3076at 3885.012 kb on + strand, within DvMF_3076at 3885.021 kb on - strand, within DvMF_3076at 3885.183 kb on + strand, within DvMF_3076at 3885.371 kb on - strand, within DvMF_3076at 3885.836 kb on - strandat 3886.008 kb on - strandat 3886.008 kb on - strandat 3886.037 kb on + strandat 3886.576 kb on + strand, within DvMF_3077

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,883,647 + -1.7
3,883,647 + -0.8
3,883,680 + DvMF_3075 0.12 -0.4
3,883,849 - DvMF_3075 0.30 -1.0
3,883,862 - DvMF_3075 0.31 -1.4
3,883,956 + DvMF_3075 0.42 -2.6
3,883,987 - DvMF_3075 0.45 -2.3
3,884,450 + -1.2
3,884,566 + -0.6
3,884,649 - DvMF_3076 0.14 -1.4
3,885,012 + DvMF_3076 0.43 -0.5
3,885,021 - DvMF_3076 0.44 -0.5
3,885,183 + DvMF_3076 0.57 -1.4
3,885,371 - DvMF_3076 0.73 -0.3
3,885,836 - -0.8
3,886,008 - -1.0
3,886,008 - +0.1
3,886,037 + -1.0
3,886,576 + DvMF_3077 0.35 -0.1

Or see this region's nucleotide sequence