Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2807 and DvMF_2808 are separated by 4 nucleotides DvMF_2808 and DvMF_2809 are separated by 187 nucleotides DvMF_2809 and DvMF_2810 are separated by 376 nucleotides
DvMF_2807: DvMF_2807 - major facilitator superfamily MFS_1 (RefSeq), at 3,549,856 to 3,551,100
_2807
DvMF_2808: DvMF_2808 - metal dependent phosphohydrolase (RefSeq), at 3,551,105 to 3,551,647
_2808
DvMF_2809: DvMF_2809 - aminotransferase class V (RefSeq), at 3,551,835 to 3,552,938
_2809
DvMF_2810: DvMF_2810 - glutamate racemase (RefSeq), at 3,553,315 to 3,554,241
_2810
Position (kb)
3551
3552
3553 Strain fitness (log2 ratio)
-2
-1
0
1 at 3550.905 kb on + strand, within DvMF_2807 at 3551.268 kb on + strand, within DvMF_2808 at 3551.327 kb on - strand, within DvMF_2808 at 3551.357 kb on + strand, within DvMF_2808 at 3551.576 kb on - strand, within DvMF_2808 at 3551.658 kb on + strand at 3551.666 kb on - strand at 3551.666 kb on - strand at 3551.838 kb on + strand at 3552.000 kb on + strand, within DvMF_2809 at 3552.125 kb on + strand, within DvMF_2809 at 3552.138 kb on - strand, within DvMF_2809 at 3552.249 kb on - strand, within DvMF_2809 at 3552.293 kb on - strand, within DvMF_2809 at 3552.459 kb on - strand, within DvMF_2809 at 3552.506 kb on + strand, within DvMF_2809 at 3552.523 kb on + strand, within DvMF_2809 at 3552.524 kb on - strand, within DvMF_2809 at 3552.775 kb on + strand, within DvMF_2809 at 3552.815 kb on + strand, within DvMF_2809 at 3552.823 kb on - strand, within DvMF_2809 at 3553.313 kb on + strand at 3553.313 kb on + strand at 3553.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,550,905 + DvMF_2807 0.84 -0.6 3,551,268 + DvMF_2808 0.30 -0.5 3,551,327 - DvMF_2808 0.41 -0.4 3,551,357 + DvMF_2808 0.46 -0.4 3,551,576 - DvMF_2808 0.87 -0.6 3,551,658 + -0.4 3,551,666 - -0.4 3,551,666 - -0.6 3,551,838 + -0.6 3,552,000 + DvMF_2809 0.15 -0.5 3,552,125 + DvMF_2809 0.26 -2.4 3,552,138 - DvMF_2809 0.27 +0.4 3,552,249 - DvMF_2809 0.38 -0.9 3,552,293 - DvMF_2809 0.41 -1.1 3,552,459 - DvMF_2809 0.57 -0.5 3,552,506 + DvMF_2809 0.61 -1.4 3,552,523 + DvMF_2809 0.62 -0.5 3,552,524 - DvMF_2809 0.62 -0.6 3,552,775 + DvMF_2809 0.85 -0.6 3,552,815 + DvMF_2809 0.89 -0.2 3,552,823 - DvMF_2809 0.89 -0.3 3,553,313 + -0.8 3,553,313 + -0.2 3,553,313 + -1.3
Or see this region's nucleotide sequence