Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2784 and DvMF_2785 are separated by 536 nucleotides DvMF_2785 and DvMF_2786 are separated by 324 nucleotides
DvMF_2784: DvMF_2784 - two component transcriptional regulator, LytTR family (RefSeq), at 3,523,231 to 3,524,307
_2784
DvMF_2785: DvMF_2785 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,524,844 to 3,526,868
_2785
DvMF_2786: DvMF_2786 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,527,193 to 3,528,983
_2786
Position (kb)
3524
3525
3526
3527 Strain fitness (log2 ratio)
-1
0
1 at 3523.877 kb on + strand, within DvMF_2784 at 3523.914 kb on + strand, within DvMF_2784 at 3523.980 kb on + strand, within DvMF_2784 at 3524.019 kb on + strand, within DvMF_2784 at 3524.169 kb on - strand, within DvMF_2784 at 3524.418 kb on + strand at 3524.722 kb on + strand at 3525.760 kb on + strand, within DvMF_2785 at 3525.988 kb on + strand, within DvMF_2785 at 3526.064 kb on - strand, within DvMF_2785 at 3526.101 kb on - strand, within DvMF_2785 at 3526.513 kb on + strand, within DvMF_2785 at 3526.728 kb on + strand at 3526.864 kb on + strand at 3526.974 kb on - strand at 3527.492 kb on - strand, within DvMF_2786 at 3527.615 kb on + strand, within DvMF_2786 at 3527.854 kb on + strand, within DvMF_2786
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,523,877 + DvMF_2784 0.60 -0.5 3,523,914 + DvMF_2784 0.63 -0.6 3,523,980 + DvMF_2784 0.70 -1.4 3,524,019 + DvMF_2784 0.73 +0.0 3,524,169 - DvMF_2784 0.87 +0.8 3,524,418 + -0.2 3,524,722 + -0.1 3,525,760 + DvMF_2785 0.45 -0.9 3,525,988 + DvMF_2785 0.56 -0.4 3,526,064 - DvMF_2785 0.60 -0.4 3,526,101 - DvMF_2785 0.62 -1.2 3,526,513 + DvMF_2785 0.82 -0.6 3,526,728 + -0.0 3,526,864 + -0.5 3,526,974 - -0.5 3,527,492 - DvMF_2786 0.17 -0.3 3,527,615 + DvMF_2786 0.24 -0.2 3,527,854 + DvMF_2786 0.37 -0.3
Or see this region's nucleotide sequence