Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2593

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2591 and DvMF_2592 are separated by 109 nucleotidesDvMF_2592 and DvMF_2593 are separated by 170 nucleotidesDvMF_2593 and DvMF_2594 are separated by 56 nucleotidesDvMF_2594 and DvMF_2595 are separated by 140 nucleotides DvMF_2591: DvMF_2591 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 3,275,689 to 3,276,141 _2591 DvMF_2592: DvMF_2592 - two component transcriptional regulator, Fis family (RefSeq), at 3,276,251 to 3,276,637 _2592 DvMF_2593: DvMF_2593 - protein of unknown function DUF224 cysteine-rich region domain protein (RefSeq), at 3,276,808 to 3,278,199 _2593 DvMF_2594: DvMF_2594 - hmc operon protein 5 (RefSeq), at 3,278,256 to 3,278,936 _2594 DvMF_2595: DvMF_2595 - hmc operon protein 4 (RefSeq), at 3,279,077 to 3,279,214 _2595 Position (kb) 3276 3277 3278 3279Strain fitness (log2 ratio) -2 -1 0 1at 3275.812 kb on + strand, within DvMF_2591at 3275.869 kb on + strand, within DvMF_2591at 3276.448 kb on + strand, within DvMF_2592at 3276.667 kb on + strandat 3278.208 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,275,812 + DvMF_2591 0.27 -1.4
3,275,869 + DvMF_2591 0.40 -2.3
3,276,448 + DvMF_2592 0.51 -1.9
3,276,667 + -0.7
3,278,208 + -0.9

Or see this region's nucleotide sequence