Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2479 and DvMF_2480 are separated by 313 nucleotides DvMF_2480 and DvMF_2481 are separated by 123 nucleotides DvMF_2481 and DvMF_2482 are separated by 395 nucleotides
DvMF_2479: DvMF_2479 - beta-lactamase domain protein (RefSeq), at 3,125,789 to 3,126,997
_2479
DvMF_2480: DvMF_2480 - Rubredoxin-type Fe(Cys)4 protein (RefSeq), at 3,127,311 to 3,127,469
_2480
DvMF_2481: DvMF_2481 - desulfoferrodoxin (RefSeq), at 3,127,593 to 3,127,967
_2481
DvMF_2482: DvMF_2482 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,128,363 to 3,130,384
_2482
Position (kb)
3127
3128 Strain fitness (log2 ratio)
-1
0
1 at 3126.555 kb on + strand, within DvMF_2479 at 3126.604 kb on + strand, within DvMF_2479 at 3126.628 kb on - strand, within DvMF_2479 at 3126.674 kb on + strand, within DvMF_2479 at 3126.821 kb on - strand, within DvMF_2479 at 3127.103 kb on + strand at 3127.264 kb on + strand at 3127.284 kb on + strand at 3127.292 kb on - strand at 3127.309 kb on + strand at 3127.359 kb on - strand, within DvMF_2480 at 3127.792 kb on - strand, within DvMF_2481 at 3127.941 kb on + strand at 3127.941 kb on + strand at 3128.110 kb on + strand at 3128.147 kb on - strand at 3128.352 kb on - strand at 3128.354 kb on + strand at 3128.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,126,555 + DvMF_2479 0.63 -0.6 3,126,604 + DvMF_2479 0.67 -0.9 3,126,628 - DvMF_2479 0.69 -0.7 3,126,674 + DvMF_2479 0.73 -0.4 3,126,821 - DvMF_2479 0.85 +0.0 3,127,103 + -0.8 3,127,264 + -0.1 3,127,284 + -0.8 3,127,292 - -0.9 3,127,309 + -0.4 3,127,359 - DvMF_2480 0.30 -0.7 3,127,792 - DvMF_2481 0.53 -0.2 3,127,941 + -0.5 3,127,941 + -0.7 3,128,110 + -0.5 3,128,147 - -0.9 3,128,352 - -0.7 3,128,354 + -0.6 3,128,362 - -0.5
Or see this region's nucleotide sequence