Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2371

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2370 and DvMF_2371 overlap by 4 nucleotidesDvMF_2371 and prfC are separated by 471 nucleotides DvMF_2370: DvMF_2370 - carbamoyl phosphate synthase small subunit (RefSeq), at 2,990,067 to 2,991,197 _2370 DvMF_2371: DvMF_2371 - 3-deoxy-manno-octulosonate cytidylyltransferase (RefSeq), at 2,991,194 to 2,992,006 _2371 DvMF_2372: prfC - peptide chain release factor 3 (RefSeq), at 2,992,478 to 2,994,067 prfC Position (kb) 2991 2992 2993Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2990.250 kb on + strand, within DvMF_2370at 2990.250 kb on + strand, within DvMF_2370at 2990.250 kb on + strand, within DvMF_2370at 2990.590 kb on - strand, within DvMF_2370at 2990.870 kb on + strand, within DvMF_2370at 2992.026 kb on - strandat 2992.655 kb on + strand, within prfCat 2992.957 kb on + strand, within prfCat 2992.976 kb on + strand, within prfCat 2992.981 kb on + strand, within prfCat 2992.984 kb on - strand, within prfC

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,990,250 + DvMF_2370 0.16 -4.2
2,990,250 + DvMF_2370 0.16 -1.4
2,990,250 + DvMF_2370 0.16 -4.0
2,990,590 - DvMF_2370 0.46 -3.0
2,990,870 + DvMF_2370 0.71 -4.2
2,992,026 - -0.3
2,992,655 + prfC DvMF_2372 0.11 -0.4
2,992,957 + prfC DvMF_2372 0.30 -0.6
2,992,976 + prfC DvMF_2372 0.31 -0.3
2,992,981 + prfC DvMF_2372 0.32 -1.2
2,992,984 - prfC DvMF_2372 0.32 -0.9

Or see this region's nucleotide sequence