Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1792 and DvMF_1793 are separated by 53 nucleotides DvMF_1793 and DvMF_1794 are separated by 254 nucleotides DvMF_1794 and DvMF_1795 are separated by 51 nucleotides DvMF_1795 and DvMF_1796 are separated by 69 nucleotides
DvMF_1792: DvMF_1792 - 3-isopropylmalate dehydratase large subunit (RefSeq), at 2,192,427 to 2,193,683
_1792
DvMF_1793: DvMF_1793 - 3-isopropylmalate dehydratase, small subunit (RefSeq), at 2,193,737 to 2,194,228
_1793
DvMF_1794: DvMF_1794 - 3-isopropylmalate dehydrogenase (RefSeq), at 2,194,483 to 2,195,559
_1794
DvMF_1795: DvMF_1795 - hypothetical protein (RefSeq), at 2,195,611 to 2,195,760
_1795
DvMF_1796: DvMF_1796 - hypothetical protein (RefSeq), at 2,195,830 to 2,196,576
_1796
Position (kb)
2194
2195
2196 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2193.536 kb on + strand, within DvMF_1792 at 2193.833 kb on - strand, within DvMF_1793 at 2193.855 kb on + strand, within DvMF_1793 at 2194.210 kb on - strand at 2194.247 kb on - strand at 2194.247 kb on - strand at 2194.399 kb on + strand at 2194.616 kb on - strand, within DvMF_1794 at 2195.112 kb on + strand, within DvMF_1794 at 2195.823 kb on + strand at 2195.898 kb on - strand at 2195.960 kb on - strand, within DvMF_1796 at 2195.998 kb on + strand, within DvMF_1796 at 2196.007 kb on + strand, within DvMF_1796 at 2196.267 kb on + strand, within DvMF_1796 at 2196.427 kb on + strand, within DvMF_1796 at 2196.427 kb on - strand, within DvMF_1796
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 2,193,536 + DvMF_1792 0.88 -4.6 2,193,833 - DvMF_1793 0.20 -6.1 2,193,855 + DvMF_1793 0.24 -5.9 2,194,210 - -3.9 2,194,247 - -1.7 2,194,247 - -1.4 2,194,399 + -1.0 2,194,616 - DvMF_1794 0.12 -5.0 2,195,112 + DvMF_1794 0.58 -5.7 2,195,823 + +0.5 2,195,898 - -0.3 2,195,960 - DvMF_1796 0.17 +0.1 2,195,998 + DvMF_1796 0.22 -0.2 2,196,007 + DvMF_1796 0.24 -0.1 2,196,267 + DvMF_1796 0.59 -0.5 2,196,427 + DvMF_1796 0.80 +0.2 2,196,427 - DvMF_1796 0.80 -1.4
Or see this region's nucleotide sequence