Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1400

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1399 and DvMF_1400 are separated by 120 nucleotidesDvMF_1400 and DvMF_1401 overlap by 65 nucleotides DvMF_1399: DvMF_1399 - Ribosomal small subunit Rsm22 (RefSeq), at 1,707,374 to 1,710,295 _1399 DvMF_1400: DvMF_1400 - lipoate-protein ligase B (RefSeq), at 1,710,416 to 1,711,072 _1400 DvMF_1401: DvMF_1401 - lipoyl synthase (RefSeq), at 1,711,008 to 1,711,910 _1401 Position (kb) 1710 1711 1712Strain fitness (log2 ratio) -1 0 1at 1709.990 kb on + strand, within DvMF_1399at 1710.156 kb on + strandat 1710.156 kb on + strandat 1710.174 kb on - strandat 1710.423 kb on + strandat 1710.740 kb on - strand, within DvMF_1400at 1710.762 kb on + strand, within DvMF_1400at 1710.842 kb on + strand, within DvMF_1400at 1711.115 kb on + strand, within DvMF_1401at 1711.299 kb on + strand, within DvMF_1401at 1711.774 kb on + strand, within DvMF_1401

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,709,990 + DvMF_1399 0.90 -0.2
1,710,156 + -0.3
1,710,156 + -0.1
1,710,174 - +0.2
1,710,423 + -0.8
1,710,740 - DvMF_1400 0.49 -1.2
1,710,762 + DvMF_1400 0.53 -0.7
1,710,842 + DvMF_1400 0.65 -0.8
1,711,115 + DvMF_1401 0.12 -0.6
1,711,299 + DvMF_1401 0.32 +0.5
1,711,774 + DvMF_1401 0.85 -0.4

Or see this region's nucleotide sequence