Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1161 and DvMF_1162 are separated by 119 nucleotides DvMF_1162 and DvMF_1163 overlap by 1 nucleotides DvMF_1163 and DvMF_1164 are separated by 12 nucleotides
DvMF_1161: DvMF_1161 - Hemolysin-type calcium-binding region (RefSeq), at 1,429,589 to 1,437,202
_1161
DvMF_1162: DvMF_1162 - ABC transporter related (RefSeq), at 1,437,322 to 1,438,047
_1162
DvMF_1163: DvMF_1163 - ABC transporter related (RefSeq), at 1,438,047 to 1,438,814
_1163
DvMF_1164: DvMF_1164 - inner-membrane translocator (RefSeq), at 1,438,827 to 1,439,903
_1164
Position (kb)
1437
1438
1439 Strain fitness (log2 ratio)
-2
-1
0
1 at 1436.368 kb on - strand, within DvMF_1161 at 1436.472 kb on - strand at 1436.703 kb on - strand at 1436.732 kb on - strand at 1437.209 kb on + strand at 1437.272 kb on + strand at 1437.335 kb on - strand at 1437.536 kb on + strand, within DvMF_1162 at 1437.910 kb on + strand, within DvMF_1162 at 1438.303 kb on - strand, within DvMF_1163 at 1438.338 kb on - strand, within DvMF_1163 at 1438.542 kb on - strand, within DvMF_1163 at 1439.010 kb on - strand, within DvMF_1164 at 1439.014 kb on - strand, within DvMF_1164
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,436,368 - DvMF_1161 0.89 -0.5 1,436,472 - -0.5 1,436,703 - +0.3 1,436,732 - -1.6 1,437,209 + -0.7 1,437,272 + +0.3 1,437,335 - -0.4 1,437,536 + DvMF_1162 0.29 -2.0 1,437,910 + DvMF_1162 0.81 -0.6 1,438,303 - DvMF_1163 0.33 -0.7 1,438,338 - DvMF_1163 0.38 -0.8 1,438,542 - DvMF_1163 0.64 -0.2 1,439,010 - DvMF_1164 0.17 -0.5 1,439,014 - DvMF_1164 0.17 +0.5
Or see this region's nucleotide sequence