Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1026

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1024 and DvMF_1025 are separated by 11 nucleotidesDvMF_1025 and DvMF_1026 are separated by 4 nucleotidesDvMF_1026 and DvMF_1027 are separated by 26 nucleotides DvMF_1024: DvMF_1024 - hypothetical protein (RefSeq), at 1,242,732 to 1,244,696 _1024 DvMF_1025: DvMF_1025 - hypothetical protein (RefSeq), at 1,244,708 to 1,245,256 _1025 DvMF_1026: DvMF_1026 - hypothetical protein (RefSeq), at 1,245,261 to 1,245,866 _1026 DvMF_1027: DvMF_1027 - type II and III secretion system protein (RefSeq), at 1,245,893 to 1,247,551 _1027 Position (kb) 1245 1246Strain fitness (log2 ratio) -1 0 1at 1244.304 kb on + strand, within DvMF_1024at 1244.309 kb on + strand, within DvMF_1024at 1244.382 kb on + strand, within DvMF_1024at 1244.418 kb on + strand, within DvMF_1024at 1244.467 kb on - strand, within DvMF_1024at 1244.488 kb on - strand, within DvMF_1024at 1244.488 kb on - strand, within DvMF_1024at 1244.677 kb on - strandat 1244.780 kb on + strand, within DvMF_1025at 1244.947 kb on - strand, within DvMF_1025at 1245.165 kb on - strand, within DvMF_1025at 1245.500 kb on - strand, within DvMF_1026at 1245.677 kb on + strand, within DvMF_1026at 1245.695 kb on - strand, within DvMF_1026at 1245.721 kb on + strand, within DvMF_1026at 1245.738 kb on - strand, within DvMF_1026at 1245.802 kb on - strand, within DvMF_1026at 1245.917 kb on + strandat 1245.925 kb on - strandat 1245.975 kb on - strandat 1246.133 kb on + strand, within DvMF_1027at 1246.165 kb on + strand, within DvMF_1027at 1246.301 kb on + strand, within DvMF_1027at 1246.448 kb on + strand, within DvMF_1027

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,244,304 + DvMF_1024 0.80 +0.1
1,244,309 + DvMF_1024 0.80 +0.2
1,244,382 + DvMF_1024 0.84 +0.4
1,244,418 + DvMF_1024 0.86 +1.0
1,244,467 - DvMF_1024 0.88 +0.2
1,244,488 - DvMF_1024 0.89 +0.1
1,244,488 - DvMF_1024 0.89 +0.3
1,244,677 - +1.1
1,244,780 + DvMF_1025 0.13 -0.2
1,244,947 - DvMF_1025 0.44 +0.6
1,245,165 - DvMF_1025 0.83 +0.2
1,245,500 - DvMF_1026 0.39 +0.5
1,245,677 + DvMF_1026 0.69 -0.4
1,245,695 - DvMF_1026 0.72 +0.3
1,245,721 + DvMF_1026 0.76 +0.2
1,245,738 - DvMF_1026 0.79 +0.3
1,245,802 - DvMF_1026 0.89 +0.6
1,245,917 + -0.0
1,245,925 - +1.0
1,245,975 - +0.3
1,246,133 + DvMF_1027 0.14 +0.3
1,246,165 + DvMF_1027 0.16 +0.5
1,246,301 + DvMF_1027 0.25 +0.2
1,246,448 + DvMF_1027 0.33 +0.4

Or see this region's nucleotide sequence