Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0432

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0430 and DvMF_0431 overlap by 4 nucleotidesDvMF_0431 and DvMF_0432 overlap by 11 nucleotidesDvMF_0432 and pyrG are separated by 617 nucleotides DvMF_0430: DvMF_0430 - protein of unknown function DUF1239 (RefSeq), at 504,336 to 505,145 _0430 DvMF_0431: DvMF_0431 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family (RefSeq), at 505,142 to 505,669 _0431 DvMF_0432: DvMF_0432 - 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq), at 505,659 to 506,471 _0432 DvMF_0433: pyrG - CTP synthetase (RefSeq), at 507,089 to 508,741 pyrG Position (kb) 505 506 507Strain fitness (log2 ratio) -2 -1 0 1at 505.332 kb on - strand, within DvMF_0431at 505.382 kb on - strand, within DvMF_0431at 506.526 kb on - strandat 506.710 kb on - strandat 506.749 kb on + strandat 506.757 kb on - strandat 506.816 kb on - strandat 507.003 kb on - strandat 507.049 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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505,332 - DvMF_0431 0.36 +0.0
505,382 - DvMF_0431 0.45 -0.0
506,526 - -1.9
506,710 - -0.1
506,749 + +0.5
506,757 - -0.6
506,816 - -0.7
507,003 - -0.9
507,049 + -0.4

Or see this region's nucleotide sequence