Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0184 and DvMF_0185 are separated by 57 nucleotides DvMF_0185 and DvMF_0186 are separated by 84 nucleotides DvMF_0186 and DvMF_0187 are separated by 174 nucleotides DvMF_0187 and glpX are separated by 235 nucleotides
DvMF_0184: DvMF_0184 - pyruvate flavodoxin/ferredoxin oxidoreductase domain protein (RefSeq), at 200,775 to 202,466
_0184
DvMF_0185: DvMF_0185 - pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit (RefSeq), at 202,524 to 203,375
_0185
DvMF_0186: DvMF_0186 - hypothetical protein (RefSeq), at 203,460 to 203,807
_0186
DvMF_0187: DvMF_0187 - hypothetical protein (RefSeq), at 203,982 to 204,512
_0187
DvMF_0188: glpX - fructose 1,6-bisphosphatase II (RefSeq), at 204,748 to 205,731
glpX
Position (kb) 203
204 Strain fitness (log2 ratio) -1
0
1 at 202.461 kb on + strand at 202.558 kb on - strand at 202.747 kb on + strand, within DvMF_0185 at 202.981 kb on - strand, within DvMF_0185 at 203.371 kb on - strand at 203.548 kb on + strand, within DvMF_0186 at 203.573 kb on + strand, within DvMF_0186 at 203.573 kb on - strand, within DvMF_0186 at 203.603 kb on + strand, within DvMF_0186 at 203.783 kb on + strand at 203.951 kb on - strand at 204.129 kb on - strand, within DvMF_0187 at 204.306 kb on - strand, within DvMF_0187 at 204.404 kb on - strand, within DvMF_0187 at 204.413 kb on + strand, within DvMF_0187 at 204.525 kb on + strand at 204.626 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 202,461 + -0.4 202,558 - -0.5 202,747 + DvMF_0185 0.26 -0.2 202,981 - DvMF_0185 0.54 -0.6 203,371 - +0.6 203,548 + DvMF_0186 0.25 -0.2 203,573 + DvMF_0186 0.32 -0.5 203,573 - DvMF_0186 0.32 -0.1 203,603 + DvMF_0186 0.41 -0.4 203,783 + -0.6 203,951 - -0.8 204,129 - DvMF_0187 0.28 -0.5 204,306 - DvMF_0187 0.61 -0.3 204,404 - DvMF_0187 0.79 -0.3 204,413 + DvMF_0187 0.81 -0.3 204,525 + -0.4 204,626 - -1.2
Or see this region's nucleotide sequence