Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1955

Experiment: Pyruvate-Sulfite (60-20mM) with Aluminum 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntproA and nadD are separated by 25 nucleotidesnadD and DVU1955 overlap by 4 nucleotidesDVU1955 and DVU1956 are separated by 141 nucleotides DVU1953: proA - gamma-glutamyl phosphate reductase (TIGR), at 2,026,227 to 2,027,486 proA DVU1954: nadD - nicotinate (nicotinamide) nucleotide adenylyltransferase (TIGR), at 2,027,512 to 2,028,216 nadD DVU1955: DVU1955 - TPR domain protein (TIGR), at 2,028,213 to 2,029,046 DVU1955 DVU1956: DVU1956 - heptosyltransferase family protein (TIGR), at 2,029,188 to 2,030,243 DVU1956 Position (kb) 2028 2029 2030Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 2027.237 kb on + strand, within proAat 2027.385 kb on + strandat 2028.181 kb on + strandat 2028.387 kb on - strand, within DVU1955at 2028.447 kb on + strand, within DVU1955at 2028.561 kb on - strand, within DVU1955at 2028.644 kb on - strand, within DVU1955at 2028.686 kb on + strand, within DVU1955at 2028.716 kb on + strand, within DVU1955at 2028.833 kb on - strand, within DVU1955at 2028.855 kb on + strand, within DVU1955at 2028.860 kb on + strand, within DVU1955at 2028.863 kb on - strand, within DVU1955at 2028.863 kb on - strand, within DVU1955at 2028.863 kb on - strand, within DVU1955at 2028.890 kb on + strand, within DVU1955at 2028.898 kb on - strand, within DVU1955at 2028.898 kb on - strand, within DVU1955at 2028.898 kb on - strand, within DVU1955at 2028.902 kb on + strand, within DVU1955at 2028.922 kb on + strand, within DVU1955at 2029.173 kb on + strandat 2029.181 kb on - strandat 2029.260 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Aluminum 1mM
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2,027,237 + proA DVU1953 0.80 -6.9
2,027,385 + +2.5
2,028,181 + -0.1
2,028,387 - DVU1955 0.21 -0.2
2,028,447 + DVU1955 0.28 +0.9
2,028,561 - DVU1955 0.42 +0.3
2,028,644 - DVU1955 0.52 -0.5
2,028,686 + DVU1955 0.57 +0.5
2,028,716 + DVU1955 0.60 +1.5
2,028,833 - DVU1955 0.74 +1.8
2,028,855 + DVU1955 0.77 -1.3
2,028,860 + DVU1955 0.78 +0.2
2,028,863 - DVU1955 0.78 -0.1
2,028,863 - DVU1955 0.78 -0.1
2,028,863 - DVU1955 0.78 -0.7
2,028,890 + DVU1955 0.81 +0.8
2,028,898 - DVU1955 0.82 +0.2
2,028,898 - DVU1955 0.82 +0.9
2,028,898 - DVU1955 0.82 +0.6
2,028,902 + DVU1955 0.83 +0.6
2,028,922 + DVU1955 0.85 -0.1
2,029,173 + +0.1
2,029,181 - -4.4
2,029,260 - +0.5

Or see this region's nucleotide sequence