Experiment: Pyruvate-Sulfite (60-20mM) with Aluminum 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1528 and DVU1529 are separated by 220 nucleotides DVU1529 and DVU1530 are separated by 136 nucleotides
DVU1528: DVU1528 - cytidine/deoxycytidylate deaminase family protein (TIGR), at 1,596,516 to 1,597,001
DVU1528
DVU1529: DVU1529 - decarboxylase family protein (TIGR), at 1,597,222 to 1,597,878
DVU1529
DVU1530: DVU1530 - metallo-beta-lactamase family protein (TIGR), at 1,598,015 to 1,599,625
DVU1530
Position (kb)
1597
1598 Strain fitness (log2 ratio)
-2
-1
0
1 at 1596.343 kb on + strand at 1596.343 kb on + strand at 1596.358 kb on - strand at 1596.371 kb on - strand at 1596.378 kb on + strand at 1596.403 kb on - strand at 1596.405 kb on + strand at 1596.405 kb on + strand at 1596.499 kb on + strand at 1596.499 kb on + strand at 1596.507 kb on - strand at 1596.507 kb on - strand at 1596.523 kb on + strand at 1597.070 kb on - strand at 1597.151 kb on - strand at 1597.166 kb on + strand at 1597.166 kb on + strand at 1597.174 kb on - strand at 1597.174 kb on - strand at 1597.174 kb on - strand at 1597.186 kb on + strand at 1597.187 kb on + strand at 1597.276 kb on - strand at 1597.291 kb on + strand, within DVU1529 at 1597.425 kb on - strand, within DVU1529 at 1597.425 kb on - strand, within DVU1529 at 1597.468 kb on - strand, within DVU1529 at 1597.474 kb on + strand, within DVU1529 at 1597.535 kb on + strand, within DVU1529 at 1597.543 kb on + strand, within DVU1529 at 1597.548 kb on + strand, within DVU1529 at 1597.556 kb on - strand, within DVU1529 at 1597.721 kb on - strand, within DVU1529 at 1597.773 kb on - strand, within DVU1529 at 1597.807 kb on - strand, within DVU1529 at 1597.819 kb on - strand at 1597.823 kb on + strand at 1598.007 kb on - strand at 1598.074 kb on + strand at 1598.074 kb on + strand at 1598.082 kb on - strand at 1598.119 kb on - strand at 1598.209 kb on - strand, within DVU1530 at 1598.255 kb on + strand, within DVU1530 at 1598.272 kb on + strand, within DVU1530 at 1598.380 kb on + strand, within DVU1530 at 1598.550 kb on + strand, within DVU1530 at 1598.717 kb on + strand, within DVU1530 at 1598.785 kb on + strand, within DVU1530 at 1598.785 kb on + strand, within DVU1530 at 1598.793 kb on + strand, within DVU1530 at 1598.860 kb on + strand, within DVU1530 at 1598.860 kb on + strand, within DVU1530
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Aluminum 1mM remove 1,596,343 + -0.8 1,596,343 + -1.4 1,596,358 - +0.1 1,596,371 - -1.2 1,596,378 + +0.4 1,596,403 - -2.7 1,596,405 + -0.2 1,596,405 + -1.3 1,596,499 + -0.1 1,596,499 + -0.2 1,596,507 - -0.5 1,596,507 - -0.1 1,596,523 + +0.2 1,597,070 - -0.3 1,597,151 - +1.6 1,597,166 + +0.1 1,597,166 + +0.1 1,597,174 - -1.3 1,597,174 - +0.0 1,597,174 - +0.9 1,597,186 + -0.7 1,597,187 + -0.3 1,597,276 - +0.7 1,597,291 + DVU1529 0.11 +0.2 1,597,425 - DVU1529 0.31 -0.4 1,597,425 - DVU1529 0.31 -1.6 1,597,468 - DVU1529 0.37 -0.5 1,597,474 + DVU1529 0.38 -0.4 1,597,535 + DVU1529 0.48 -0.6 1,597,543 + DVU1529 0.49 -0.6 1,597,548 + DVU1529 0.50 -2.2 1,597,556 - DVU1529 0.51 +0.4 1,597,721 - DVU1529 0.76 +0.9 1,597,773 - DVU1529 0.84 -0.3 1,597,807 - DVU1529 0.89 -0.0 1,597,819 - -0.2 1,597,823 + -0.3 1,598,007 - -1.6 1,598,074 + -0.1 1,598,074 + -0.6 1,598,082 - -0.4 1,598,119 - +0.1 1,598,209 - DVU1530 0.12 +0.2 1,598,255 + DVU1530 0.15 +0.1 1,598,272 + DVU1530 0.16 -0.7 1,598,380 + DVU1530 0.23 -0.5 1,598,550 + DVU1530 0.33 +0.3 1,598,717 + DVU1530 0.44 +0.2 1,598,785 + DVU1530 0.48 -2.2 1,598,785 + DVU1530 0.48 -1.6 1,598,793 + DVU1530 0.48 -0.1 1,598,860 + DVU1530 0.52 +0.5 1,598,860 + DVU1530 0.52 -0.3
Or see this region's nucleotide sequence