Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1529

Experiment: Pyruvate-Sulfite (60-20mM) with Aluminum 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1528 and DVU1529 are separated by 220 nucleotidesDVU1529 and DVU1530 are separated by 136 nucleotides DVU1528: DVU1528 - cytidine/deoxycytidylate deaminase family protein (TIGR), at 1,596,516 to 1,597,001 DVU1528 DVU1529: DVU1529 - decarboxylase family protein (TIGR), at 1,597,222 to 1,597,878 DVU1529 DVU1530: DVU1530 - metallo-beta-lactamase family protein (TIGR), at 1,598,015 to 1,599,625 DVU1530 Position (kb) 1597 1598Strain fitness (log2 ratio) -2 -1 0 1at 1596.343 kb on + strandat 1596.343 kb on + strandat 1596.358 kb on - strandat 1596.371 kb on - strandat 1596.378 kb on + strandat 1596.403 kb on - strandat 1596.405 kb on + strandat 1596.405 kb on + strandat 1596.499 kb on + strandat 1596.499 kb on + strandat 1596.507 kb on - strandat 1596.507 kb on - strandat 1596.523 kb on + strandat 1597.070 kb on - strandat 1597.151 kb on - strandat 1597.166 kb on + strandat 1597.166 kb on + strandat 1597.174 kb on - strandat 1597.174 kb on - strandat 1597.174 kb on - strandat 1597.186 kb on + strandat 1597.187 kb on + strandat 1597.276 kb on - strandat 1597.291 kb on + strand, within DVU1529at 1597.425 kb on - strand, within DVU1529at 1597.425 kb on - strand, within DVU1529at 1597.468 kb on - strand, within DVU1529at 1597.474 kb on + strand, within DVU1529at 1597.535 kb on + strand, within DVU1529at 1597.543 kb on + strand, within DVU1529at 1597.548 kb on + strand, within DVU1529at 1597.556 kb on - strand, within DVU1529at 1597.721 kb on - strand, within DVU1529at 1597.773 kb on - strand, within DVU1529at 1597.807 kb on - strand, within DVU1529at 1597.819 kb on - strandat 1597.823 kb on + strandat 1598.007 kb on - strandat 1598.074 kb on + strandat 1598.074 kb on + strandat 1598.082 kb on - strandat 1598.119 kb on - strandat 1598.209 kb on - strand, within DVU1530at 1598.255 kb on + strand, within DVU1530at 1598.272 kb on + strand, within DVU1530at 1598.380 kb on + strand, within DVU1530at 1598.550 kb on + strand, within DVU1530at 1598.717 kb on + strand, within DVU1530at 1598.785 kb on + strand, within DVU1530at 1598.785 kb on + strand, within DVU1530at 1598.793 kb on + strand, within DVU1530at 1598.860 kb on + strand, within DVU1530at 1598.860 kb on + strand, within DVU1530

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Aluminum 1mM
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1,596,343 + -0.8
1,596,343 + -1.4
1,596,358 - +0.1
1,596,371 - -1.2
1,596,378 + +0.4
1,596,403 - -2.7
1,596,405 + -0.2
1,596,405 + -1.3
1,596,499 + -0.1
1,596,499 + -0.2
1,596,507 - -0.5
1,596,507 - -0.1
1,596,523 + +0.2
1,597,070 - -0.3
1,597,151 - +1.6
1,597,166 + +0.1
1,597,166 + +0.1
1,597,174 - -1.3
1,597,174 - +0.0
1,597,174 - +0.9
1,597,186 + -0.7
1,597,187 + -0.3
1,597,276 - +0.7
1,597,291 + DVU1529 0.11 +0.2
1,597,425 - DVU1529 0.31 -0.4
1,597,425 - DVU1529 0.31 -1.6
1,597,468 - DVU1529 0.37 -0.5
1,597,474 + DVU1529 0.38 -0.4
1,597,535 + DVU1529 0.48 -0.6
1,597,543 + DVU1529 0.49 -0.6
1,597,548 + DVU1529 0.50 -2.2
1,597,556 - DVU1529 0.51 +0.4
1,597,721 - DVU1529 0.76 +0.9
1,597,773 - DVU1529 0.84 -0.3
1,597,807 - DVU1529 0.89 -0.0
1,597,819 - -0.2
1,597,823 + -0.3
1,598,007 - -1.6
1,598,074 + -0.1
1,598,074 + -0.6
1,598,082 - -0.4
1,598,119 - +0.1
1,598,209 - DVU1530 0.12 +0.2
1,598,255 + DVU1530 0.15 +0.1
1,598,272 + DVU1530 0.16 -0.7
1,598,380 + DVU1530 0.23 -0.5
1,598,550 + DVU1530 0.33 +0.3
1,598,717 + DVU1530 0.44 +0.2
1,598,785 + DVU1530 0.48 -2.2
1,598,785 + DVU1530 0.48 -1.6
1,598,793 + DVU1530 0.48 -0.1
1,598,860 + DVU1530 0.52 +0.5
1,598,860 + DVU1530 0.52 -0.3

Or see this region's nucleotide sequence