Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1257

Experiment: Pyruvate-Sulfite (60-20mM) with Aluminum 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1256 and DVU1257 are separated by 378 nucleotidesDVU1257 and glnN are separated by 146 nucleotides DVU1256: DVU1256 - heptosyltransferase family protein (TIGR), at 1,342,002 to 1,342,979 DVU1256 DVU1257: DVU1257 - RNA-binding protein (TIGR), at 1,343,358 to 1,343,630 DVU1257 DVU1258: glnN - glutamine synthetase, type III (TIGR), at 1,343,777 to 1,345,957 glnN Position (kb) 1343 1344Strain fitness (log2 ratio) -3 -2 -1 0 1at 1342.384 kb on + strand, within DVU1256at 1342.445 kb on + strand, within DVU1256at 1342.549 kb on - strand, within DVU1256at 1342.596 kb on + strand, within DVU1256at 1342.606 kb on + strand, within DVU1256at 1342.639 kb on - strand, within DVU1256at 1342.704 kb on - strand, within DVU1256at 1342.732 kb on + strand, within DVU1256at 1342.732 kb on + strand, within DVU1256at 1342.824 kb on + strand, within DVU1256at 1342.838 kb on + strand, within DVU1256at 1342.918 kb on - strandat 1342.937 kb on + strandat 1342.945 kb on - strandat 1342.954 kb on + strandat 1343.002 kb on + strandat 1343.022 kb on + strandat 1343.042 kb on - strandat 1343.115 kb on + strandat 1343.123 kb on - strandat 1343.221 kb on + strandat 1343.249 kb on + strandat 1343.266 kb on + strandat 1343.435 kb on + strand, within DVU1257at 1343.510 kb on + strand, within DVU1257at 1343.707 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Aluminum 1mM
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1,342,384 + DVU1256 0.39 -0.1
1,342,445 + DVU1256 0.45 -0.4
1,342,549 - DVU1256 0.56 -0.5
1,342,596 + DVU1256 0.61 -0.4
1,342,606 + DVU1256 0.62 -0.2
1,342,639 - DVU1256 0.65 -0.0
1,342,704 - DVU1256 0.72 -1.5
1,342,732 + DVU1256 0.75 +0.0
1,342,732 + DVU1256 0.75 -0.7
1,342,824 + DVU1256 0.84 -2.8
1,342,838 + DVU1256 0.85 -0.3
1,342,918 - -2.2
1,342,937 + +0.0
1,342,945 - -2.1
1,342,954 + -1.0
1,343,002 + -0.9
1,343,022 + +0.1
1,343,042 - -0.9
1,343,115 + -0.2
1,343,123 - +0.5
1,343,221 + -0.1
1,343,249 + +0.4
1,343,266 + -0.0
1,343,435 + DVU1257 0.28 -0.2
1,343,510 + DVU1257 0.56 -0.3
1,343,707 - +0.1

Or see this region's nucleotide sequence