Strain Fitness in Pantoea sp. MT58 around IAI47_16850

Experiment: Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,566,982	+				-1.5
3,566,995	+		IAI47_16845	0.10	-0.3
3,566,995	+		IAI47_16845	0.10	-0.6
3,566,995	+		IAI47_16845	0.10	-0.6
3,566,996	-		IAI47_16845	0.11	+1.0
3,566,996	-		IAI47_16845	0.11	-0.0
3,567,067	-		IAI47_16845	0.18	-0.7
3,567,067	-		IAI47_16845	0.18	+1.2
3,567,109	-		IAI47_16845	0.22	+0.7
3,567,109	-		IAI47_16845	0.22	+2.1
3,567,109	-		IAI47_16845	0.22	-0.5
3,567,118	+		IAI47_16845	0.23	-0.2
3,567,118	+		IAI47_16845	0.23	+0.5
3,567,118	+		IAI47_16845	0.23	-0.7
3,567,119	-		IAI47_16845	0.23	+0.4
3,567,119	-		IAI47_16845	0.23	-0.4
3,567,151	-		IAI47_16845	0.26	-0.5
3,567,168	+		IAI47_16845	0.28	-0.7
3,567,193	+		IAI47_16845	0.30	+0.4
3,567,193	+		IAI47_16845	0.30	+1.0
3,567,193	+		IAI47_16845	0.30	+0.0
3,567,193	+		IAI47_16845	0.30	-0.5
3,567,194	-		IAI47_16845	0.30	+0.1
3,567,194	-		IAI47_16845	0.30	+0.6
3,567,194	-		IAI47_16845	0.30	-1.6
3,567,194	-		IAI47_16845	0.30	-0.0
3,567,194	-		IAI47_16845	0.30	-1.4
3,567,194	-		IAI47_16845	0.30	-1.6
3,567,194	-		IAI47_16845	0.30	+0.7
3,567,201	+		IAI47_16845	0.31	+1.1
3,567,208	+		IAI47_16845	0.32	+0.4
3,567,373	+		IAI47_16845	0.48	-1.3
3,567,373	+		IAI47_16845	0.48	+0.2
3,567,373	+		IAI47_16845	0.48	+0.4
3,567,397	-		IAI47_16845	0.50	-1.3
3,567,397	-		IAI47_16845	0.50	-0.3
3,567,453	-		IAI47_16845	0.56	+1.9
3,567,533	+		IAI47_16845	0.64	+0.1
3,567,533	+		IAI47_16845	0.64	+1.1
3,567,534	-		IAI47_16845	0.64	+0.4
3,567,580	+		IAI47_16845	0.69	-0.4
3,567,652	+		IAI47_16845	0.76	-1.4
3,567,653	-		IAI47_16845	0.76	-0.6
3,567,653	-		IAI47_16845	0.76	+0.1
3,567,705	+		IAI47_16845	0.81	-0.1
3,567,706	-		IAI47_16845	0.81	-0.8
3,567,706	-		IAI47_16845	0.81	-1.2
3,567,849	+				+0.7
3,567,849	+				-0.2
3,567,849	+				-0.7
3,567,849	+				-0.7
3,567,849	+				-0.6
3,567,892	+				-2.7
3,567,892	+				-0.9
3,567,892	+				-0.4
3,567,892	+				-0.0
3,567,892	+				-1.1
3,567,893	-				+0.0
3,567,893	-				-1.5
3,567,893	-				-0.8
3,567,893	-				-0.6
3,567,913	+				-1.4
3,567,949	+				-1.2
3,567,949	+				-1.3
3,567,950	-				-1.6
3,567,950	-				+0.8
3,567,963	+				-0.7
3,567,963	+				+0.0
3,567,964	-				-0.7
3,567,964	-				+0.5
3,567,964	-				-0.2
3,567,964	-				+0.0
3,567,985	+				-0.7
3,567,985	+				+0.1
3,567,985	+				+1.8
3,567,986	-				+0.4
3,567,988	-				-0.7
3,567,988	-				-0.5
3,568,035	+				+0.1
3,568,036	-				+0.5
3,568,036	-				+0.0
3,568,080	+				-0.3
3,568,081	-				-1.8
3,568,145	+		IAI47_16850	0.13	-1.0
3,568,146	-		IAI47_16850	0.13	-0.1
3,568,146	-		IAI47_16850	0.13	-0.8
3,568,146	-		IAI47_16850	0.13	-0.3
3,568,146	-		IAI47_16850	0.13	+0.6
3,568,146	-		IAI47_16850	0.13	-0.0
3,568,146	-		IAI47_16850	0.13	-1.5
3,568,146	-		IAI47_16850	0.13	+0.8
3,568,146	-		IAI47_16850	0.13	+0.5
3,568,148	+		IAI47_16850	0.14	+0.8
3,568,149	-		IAI47_16850	0.14	-1.4
3,568,149	-		IAI47_16850	0.14	-0.1
3,568,149	-		IAI47_16850	0.14	-0.4
3,568,149	-		IAI47_16850	0.14	+1.3
3,568,171	+		IAI47_16850	0.15	-0.7
3,568,172	-		IAI47_16850	0.15	+0.6
3,568,172	-		IAI47_16850	0.15	+0.0
3,568,214	+		IAI47_16850	0.18	+0.4
3,568,215	-		IAI47_16850	0.18	+0.4
3,568,215	-		IAI47_16850	0.18	-0.1
3,568,218	+		IAI47_16850	0.18	+0.8
3,568,218	+		IAI47_16850	0.18	-0.0
3,568,219	-		IAI47_16850	0.19	-0.7
3,568,219	-		IAI47_16850	0.19	-2.2
3,568,219	-		IAI47_16850	0.19	-0.4
3,568,331	+		IAI47_16850	0.27	-0.0
3,568,366	+		IAI47_16850	0.29	+0.8
3,568,366	+		IAI47_16850	0.29	-0.2
3,568,366	+		IAI47_16850	0.29	+0.5
3,568,366	+		IAI47_16850	0.29	-0.7
3,568,366	+		IAI47_16850	0.29	-1.6
3,568,366	+		IAI47_16850	0.29	-0.1
3,568,366	+		IAI47_16850	0.29	+1.2
3,568,367	-		IAI47_16850	0.29	-0.0
3,568,367	-		IAI47_16850	0.29	-1.6
3,568,367	-		IAI47_16850	0.29	-0.7
3,568,367	-		IAI47_16850	0.29	-2.9
3,568,388	+		IAI47_16850	0.31	+1.1
3,568,389	-				+2.1
3,568,396	+		IAI47_16850	0.31	-0.7
3,568,396	+		IAI47_16850	0.31	-0.5
3,568,396	+		IAI47_16850	0.31	+1.4
3,568,396	+		IAI47_16850	0.31	-0.2
3,568,397	-		IAI47_16850	0.31	-0.1
3,568,406	+		IAI47_16850	0.32	-1.6
3,568,407	-		IAI47_16850	0.32	-1.3
3,568,423	-		IAI47_16850	0.33	-1.0
3,568,457	+		IAI47_16850	0.35	-1.2
3,568,457	+		IAI47_16850	0.35	-0.1
3,568,458	-		IAI47_16850	0.36	-1.8
3,568,458	-		IAI47_16850	0.36	-0.2
3,568,458	-		IAI47_16850	0.36	+1.3
3,568,458	-		IAI47_16850	0.36	-0.0
3,568,458	-		IAI47_16850	0.36	-1.9
3,568,458	-		IAI47_16850	0.36	-0.4
3,568,458	-		IAI47_16850	0.36	-0.7
3,568,458	-		IAI47_16850	0.36	-1.2
3,568,458	-		IAI47_16850	0.36	-0.7
3,568,460	+		IAI47_16850	0.36	+0.5
3,568,460	+		IAI47_16850	0.36	+0.0
3,568,460	+		IAI47_16850	0.36	-2.8
3,568,460	+		IAI47_16850	0.36	-1.1
3,568,461	-		IAI47_16850	0.36	-0.5
3,568,461	-		IAI47_16850	0.36	-0.6
3,568,461	-		IAI47_16850	0.36	-0.6
3,568,461	-		IAI47_16850	0.36	-0.5
3,568,461	-		IAI47_16850	0.36	-0.2
3,568,461	-		IAI47_16850	0.36	-0.3
3,568,461	-		IAI47_16850	0.36	+0.1
3,568,461	-		IAI47_16850	0.36	-0.2
3,568,513	-		IAI47_16850	0.39	+0.4
3,568,517	+		IAI47_16850	0.40	-1.5
3,568,517	+		IAI47_16850	0.40	-0.7
3,568,518	-		IAI47_16850	0.40	-1.2
3,568,518	-		IAI47_16850	0.40	-0.3
3,568,518	-		IAI47_16850	0.40	-1.5
3,568,518	-		IAI47_16850	0.40	+0.2
3,568,518	-		IAI47_16850	0.40	-0.6
3,568,520	+		IAI47_16850	0.40	-0.6
3,568,521	-		IAI47_16850	0.40	-0.4
3,568,521	-		IAI47_16850	0.40	-0.1
3,568,548	+		IAI47_16850	0.42	+1.5
3,568,548	+		IAI47_16850	0.42	+0.2
3,568,548	+		IAI47_16850	0.42	-0.7
3,568,548	+		IAI47_16850	0.42	-2.1
3,568,548	+		IAI47_16850	0.42	-0.6
3,568,701	+		IAI47_16850	0.53	+0.3
3,568,701	+		IAI47_16850	0.53	+0.7
3,568,702	-		IAI47_16850	0.53	+0.7
3,568,743	+		IAI47_16850	0.56	-0.7
3,568,743	+		IAI47_16850	0.56	-0.2
3,568,743	+		IAI47_16850	0.56	-0.8
3,568,744	-		IAI47_16850	0.56	+1.9
3,568,744	-		IAI47_16850	0.56	+0.0
3,568,744	-		IAI47_16850	0.56	-0.6
3,568,770	-		IAI47_16850	0.58	-1.1
3,568,770	-		IAI47_16850	0.58	+1.2
3,568,789	+		IAI47_16850	0.59	-0.6
3,568,790	-		IAI47_16850	0.59	-1.7
3,568,854	+		IAI47_16850	0.64	+0.5
3,568,854	+		IAI47_16850	0.64	+0.2
3,568,854	+		IAI47_16850	0.64	+0.6
3,568,854	+		IAI47_16850	0.64	+0.9
3,568,855	-		IAI47_16850	0.64	+0.3
3,568,903	+		IAI47_16850	0.67	-0.4
3,568,944	+		IAI47_16850	0.70	-0.2
3,568,944	+		IAI47_16850	0.70	-0.4
3,568,951	-		IAI47_16850	0.71	-0.8
3,568,992	+		IAI47_16850	0.73	-0.3
3,568,998	+		IAI47_16850	0.74	+0.3
3,568,999	-		IAI47_16850	0.74	+1.1
3,569,053	-		IAI47_16850	0.78	-1.0
3,569,084	+		IAI47_16850	0.80	-0.5
3,569,084	+		IAI47_16850	0.80	-0.4
3,569,084	+		IAI47_16850	0.80	-0.9
3,569,085	-		IAI47_16850	0.80	-0.5
3,569,097	-		IAI47_16850	0.81	-0.8
3,569,123	+		IAI47_16850	0.83	+0.7
3,569,123	+		IAI47_16850	0.83	-0.3
3,569,123	+		IAI47_16850	0.83	+1.5
3,569,163	+		IAI47_16850	0.86	-0.1
3,569,164	-		IAI47_16850	0.86	-0.5
3,569,164	-		IAI47_16850	0.86	-0.4
3,569,164	-		IAI47_16850	0.86	-0.8
3,569,191	+		IAI47_16850	0.88	-0.0
3,569,191	+		IAI47_16850	0.88	-0.6
3,569,214	+		IAI47_16850	0.89	+0.7
3,569,214	+		IAI47_16850	0.89	-0.1
3,569,215	-		IAI47_16850	0.89	+1.4
3,569,271	-				-0.2
3,569,275	+				-0.8
3,569,275	+				-1.0
3,569,275	+				+0.3
3,569,275	+				+0.0
3,569,275	+				+0.5
3,569,276	-				+0.7
3,569,276	-				-0.9
3,569,276	-				-0.2
3,569,339	+				-2.5
3,569,360	+				-0.3
3,569,361	-				-1.4
3,569,361	-				-0.3
3,569,361	-				-0.7
3,569,362	+				-0.5
3,569,362	+				+0.8
3,569,363	-				+0.6
3,569,371	-				-0.3
3,569,371	-				-0.8
3,569,405	+				-0.0
3,569,405	+				+0.4
3,569,431	+				+0.2
3,569,431	+				+1.4
3,569,431	+				-0.6
3,569,463	+				+0.1
3,569,463	+				+2.2
3,569,464	-				-0.2
3,569,464	-				-1.5
3,569,503	+		IAI47_16855	0.12	-0.4
3,569,504	-		IAI47_16855	0.12	-1.8
3,569,572	+		IAI47_16855	0.25	-0.6
3,569,573	-		IAI47_16855	0.25	-1.2
3,569,620	+		IAI47_16855	0.34	-0.5
3,569,621	-		IAI47_16855	0.34	-0.1
3,569,625	+		IAI47_16855	0.35	-1.3
3,569,626	-		IAI47_16855	0.35	-0.8
3,569,626	-		IAI47_16855	0.35	-0.7
3,569,651	+		IAI47_16855	0.40	+0.1
3,569,651	+		IAI47_16855	0.40	-1.8
3,569,651	+		IAI47_16855	0.40	+0.6
3,569,652	-		IAI47_16855	0.40	-0.1
3,569,652	-		IAI47_16855	0.40	-0.9
3,569,658	+		IAI47_16855	0.41	-0.8
3,569,658	+		IAI47_16855	0.41	-0.2
3,569,659	-		IAI47_16855	0.41	+0.5
3,569,745	+		IAI47_16855	0.57	+0.4
3,569,745	+		IAI47_16855	0.57	+0.2
3,569,815	-		IAI47_16855	0.71	-2.4
3,569,821	+		IAI47_16855	0.72	+1.3
3,569,821	+		IAI47_16855	0.72	+0.1
3,569,842	+		IAI47_16855	0.76	-0.8
3,569,842	+		IAI47_16855	0.76	-0.6
3,569,842	+		IAI47_16855	0.76	-1.9
3,569,842	+		IAI47_16855	0.76	+0.2
3,569,842	+		IAI47_16855	0.76	-1.3
3,569,843	-		IAI47_16855	0.76	+0.7
3,569,843	-		IAI47_16855	0.76	+1.2
3,569,843	-		IAI47_16855	0.76	-1.1
3,569,843	-		IAI47_16855	0.76	-0.5
3,569,860	+		IAI47_16855	0.79	-0.9
3,569,860	+		IAI47_16855	0.79	-1.4
3,569,860	+		IAI47_16855	0.79	+0.9
3,569,861	-		IAI47_16855	0.79	+0.4
3,569,861	-		IAI47_16855	0.79	+1.6
3,569,907	+		IAI47_16855	0.88	-0.8
3,569,907	+		IAI47_16855	0.88	-0.0
3,569,907	+		IAI47_16855	0.88	-0.5
3,569,907	+		IAI47_16855	0.88	-1.0
3,569,907	+		IAI47_16855	0.88	+0.3
3,569,907	+		IAI47_16855	0.88	+0.1
3,569,908	-		IAI47_16855	0.88	-0.4
3,569,908	-		IAI47_16855	0.88	-0.0
3,569,908	-		IAI47_16855	0.88	+0.1
3,569,941	+				-0.6
3,569,942	-				+0.6
3,569,942	-				-0.2
3,569,942	-				-0.7
3,569,992	+				-1.6
3,570,020	+				+0.3
3,570,020	+				-0.7
3,570,020	+				-0.4
3,570,020	+				+3.1
3,570,020	+				-0.8
3,570,020	+				-1.5
3,570,020	+				+1.6
3,570,020	+				+0.5
3,570,021	-				-1.2
3,570,021	-				+0.5
3,570,021	-				-0.1
3,570,021	-				-1.0
3,570,021	-				-0.1
3,570,021	-				+0.0
3,570,021	-				-0.9
3,570,021	-				-0.2
3,570,021	-				-1.6
3,570,021	-				-1.2
3,570,028	+				+1.6
3,570,029	-				-0.7
3,570,029	-				-0.9
3,570,029	-				+0.0
3,570,091	+				+0.6
3,570,091	+				+0.4
3,570,174	+				-1.9
3,570,174	+				-1.0
3,570,174	+				+0.2
3,570,174	+				+0.1
3,570,174	+				-0.1
3,570,174	+				-0.8
3,570,174	+				-0.0
3,570,174	+				-1.8
3,570,175	-				-1.4
3,570,175	-				+0.2
3,570,175	-				-0.7
3,570,175	-				-0.1
3,570,175	-				-0.9
3,570,175	-				-0.2
3,570,175	-				-0.6
3,570,175	-				-2.2
3,570,175	-				-0.3
3,570,175	-				+0.4
3,570,175	-				-1.2
3,570,175	-				-0.1
3,570,188	+				-0.2
3,570,188	+				+0.3
3,570,188	+				-0.9
3,570,188	+				-1.4
3,570,188	+				-0.3
3,570,189	-				-0.2
3,570,190	+				-2.1
3,570,191	-				+0.5
3,570,307	-		IAI47_16860	0.14	+1.5