Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06295 and H281DRAFT_06296 overlap by 4 nucleotides H281DRAFT_06296 and H281DRAFT_06297 are separated by 187 nucleotides H281DRAFT_06297 and H281DRAFT_06298 are separated by 135 nucleotides
H281DRAFT_06295: H281DRAFT_06295 - 2-keto-3-deoxy-phosphogalactonate aldolase, at 78,668 to 79,348
_06295
H281DRAFT_06296: H281DRAFT_06296 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 79,345 to 80,121
_06296
H281DRAFT_06297: H281DRAFT_06297 - L-arabinose-binding protein, at 80,309 to 81,307
_06297
H281DRAFT_06298: H281DRAFT_06298 - L-arabinose ABC transporter ATP-binding protein, at 81,443 to 83,002
_06298
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1 at 79.530 kb on + strand, within H281DRAFT_06296 at 79.530 kb on + strand, within H281DRAFT_06296 at 79.853 kb on + strand, within H281DRAFT_06296 at 79.865 kb on - strand, within H281DRAFT_06296 at 80.080 kb on - strand at 80.162 kb on + strand at 80.273 kb on - strand at 80.290 kb on + strand at 80.291 kb on - strand at 80.718 kb on - strand, within H281DRAFT_06297 at 81.191 kb on + strand, within H281DRAFT_06297 at 81.305 kb on + strand at 81.390 kb on + strand at 81.391 kb on - strand at 81.391 kb on - strand at 81.391 kb on - strand at 81.391 kb on - strand at 81.391 kb on - strand at 82.047 kb on - strand at 82.199 kb on + strand, within H281DRAFT_06298 at 82.199 kb on + strand, within H281DRAFT_06298 at 82.200 kb on - strand, within H281DRAFT_06298 at 82.200 kb on - strand, within H281DRAFT_06298 at 82.200 kb on - strand, within H281DRAFT_06298 at 82.200 kb on - strand, within H281DRAFT_06298 at 82.205 kb on + strand, within H281DRAFT_06298
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 79,530 + H281DRAFT_06296 0.24 +0.3 79,530 + H281DRAFT_06296 0.24 +0.6 79,853 + H281DRAFT_06296 0.65 +0.8 79,865 - H281DRAFT_06296 0.67 -2.6 80,080 - +0.2 80,162 + -1.4 80,273 - -0.0 80,290 + +0.5 80,291 - +0.3 80,718 - H281DRAFT_06297 0.41 +0.4 81,191 + H281DRAFT_06297 0.88 +1.2 81,305 + -0.1 81,390 + -0.7 81,391 - +1.2 81,391 - +0.4 81,391 - +1.1 81,391 - +0.4 81,391 - -0.8 82,047 - +0.3 82,199 + H281DRAFT_06298 0.48 +0.1 82,199 + H281DRAFT_06298 0.48 -0.2 82,200 - H281DRAFT_06298 0.49 +0.5 82,200 - H281DRAFT_06298 0.49 +0.6 82,200 - H281DRAFT_06298 0.49 -0.9 82,200 - H281DRAFT_06298 0.49 -1.4 82,205 + H281DRAFT_06298 0.49 -0.1
Or see this region's nucleotide sequence