Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06268

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06267 and H281DRAFT_06268 are separated by 12 nucleotidesH281DRAFT_06268 and H281DRAFT_06269 are separated by 153 nucleotidesH281DRAFT_06269 and H281DRAFT_06270 are separated by 120 nucleotides H281DRAFT_06267: H281DRAFT_06267 - prolyl-tRNA synthetase, at 47,729 to 49,465 _06267 H281DRAFT_06268: H281DRAFT_06268 - Small neutral amino acid transporter SnatA, MarC family, at 49,478 to 50,077 _06268 H281DRAFT_06269: H281DRAFT_06269 - hypoxanthine phosphoribosyltransferase, at 50,231 to 50,782 _06269 H281DRAFT_06270: H281DRAFT_06270 - signal recognition particle subunit FFH/SRP54 (srp54), at 50,903 to 52,270 _06270 Position (kb) 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 49.484 kb on + strandat 49.485 kb on - strandat 49.485 kb on - strandat 49.485 kb on - strandat 49.485 kb on - strandat 49.738 kb on + strand, within H281DRAFT_06268at 49.738 kb on + strand, within H281DRAFT_06268at 49.739 kb on - strand, within H281DRAFT_06268at 49.955 kb on - strand, within H281DRAFT_06268at 50.075 kb on + strandat 50.075 kb on + strandat 50.076 kb on - strandat 50.076 kb on - strandat 50.076 kb on - strandat 50.076 kb on - strandat 50.079 kb on + strandat 50.080 kb on - strandat 50.131 kb on - strandat 50.139 kb on + strandat 50.140 kb on - strandat 50.140 kb on - strandat 50.204 kb on + strandat 50.258 kb on - strandat 50.310 kb on + strand, within H281DRAFT_06269at 50.311 kb on - strand, within H281DRAFT_06269at 50.575 kb on - strand, within H281DRAFT_06269at 50.799 kb on + strandat 50.799 kb on + strandat 50.805 kb on + strandat 50.805 kb on + strandat 50.805 kb on + strandat 50.805 kb on + strandat 50.807 kb on + strandat 50.807 kb on + strandat 50.807 kb on + strandat 50.807 kb on + strandat 50.807 kb on + strandat 50.807 kb on + strandat 50.808 kb on - strandat 50.808 kb on - strandat 50.808 kb on - strandat 50.808 kb on - strandat 50.811 kb on + strandat 50.811 kb on + strandat 50.812 kb on - strandat 50.812 kb on - strandat 50.812 kb on - strandat 50.812 kb on - strandat 50.812 kb on - strandat 50.812 kb on - strandat 50.812 kb on - strandat 50.812 kb on - strandat 50.812 kb on - strandat 50.812 kb on - strandat 50.812 kb on - strandat 50.897 kb on + strandat 50.904 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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49,484 + -0.0
49,485 - +0.1
49,485 - +0.2
49,485 - -0.3
49,485 - -0.0
49,738 + H281DRAFT_06268 0.43 +0.3
49,738 + H281DRAFT_06268 0.43 +0.2
49,739 - H281DRAFT_06268 0.43 +1.3
49,955 - H281DRAFT_06268 0.80 +0.1
50,075 + +0.5
50,075 + +0.5
50,076 - +0.1
50,076 - -0.6
50,076 - +0.3
50,076 - +0.0
50,079 + +0.4
50,080 - -0.3
50,131 - +3.6
50,139 + -3.7
50,140 - -0.7
50,140 - -0.5
50,204 + +0.4
50,258 - +0.3
50,310 + H281DRAFT_06269 0.14 -1.2
50,311 - H281DRAFT_06269 0.14 -0.6
50,575 - H281DRAFT_06269 0.62 +2.0
50,799 + +3.0
50,799 + +0.5
50,805 + +0.2
50,805 + +0.3
50,805 + +0.5
50,805 + +1.0
50,807 + -0.1
50,807 + +0.6
50,807 + +0.9
50,807 + +0.9
50,807 + +0.6
50,807 + +0.9
50,808 - -1.1
50,808 - +0.8
50,808 - -0.1
50,808 - -0.5
50,811 + +0.1
50,811 + -0.4
50,812 - -1.9
50,812 - +0.4
50,812 - +1.0
50,812 - -1.4
50,812 - -0.4
50,812 - -0.8
50,812 - -1.4
50,812 - +0.2
50,812 - +1.4
50,812 - -0.8
50,812 - +0.7
50,897 + +0.1
50,904 + +0.5

Or see this region's nucleotide sequence