Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06143

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06141 and H281DRAFT_06142 are separated by 58 nucleotidesH281DRAFT_06142 and H281DRAFT_06143 are separated by 308 nucleotidesH281DRAFT_06143 and H281DRAFT_06144 are separated by 131 nucleotides H281DRAFT_06141: H281DRAFT_06141 - hypothetical protein, at 32,614 to 32,907 _06141 H281DRAFT_06142: H281DRAFT_06142 - hypothetical protein, at 32,966 to 33,337 _06142 H281DRAFT_06143: H281DRAFT_06143 - hypothetical protein, at 33,646 to 34,392 _06143 H281DRAFT_06144: H281DRAFT_06144 - hypothetical protein, at 34,524 to 36,422 _06144 Position (kb) 33 34 35Strain fitness (log2 ratio) -2 -1 0 1 2at 32.666 kb on + strand, within H281DRAFT_06141at 32.666 kb on + strand, within H281DRAFT_06141at 32.666 kb on + strand, within H281DRAFT_06141at 32.666 kb on + strand, within H281DRAFT_06141at 32.666 kb on + strand, within H281DRAFT_06141at 32.666 kb on + strand, within H281DRAFT_06141at 32.712 kb on - strand, within H281DRAFT_06141at 32.712 kb on - strand, within H281DRAFT_06141at 32.846 kb on + strand, within H281DRAFT_06141at 32.847 kb on - strand, within H281DRAFT_06141at 32.847 kb on - strand, within H281DRAFT_06141at 32.942 kb on + strandat 32.942 kb on + strandat 32.943 kb on - strandat 32.970 kb on + strandat 32.971 kb on - strandat 32.971 kb on - strandat 33.006 kb on - strand, within H281DRAFT_06142at 33.183 kb on + strand, within H281DRAFT_06142at 33.183 kb on + strand, within H281DRAFT_06142at 33.183 kb on + strand, within H281DRAFT_06142at 33.183 kb on + strand, within H281DRAFT_06142at 33.183 kb on + strand, within H281DRAFT_06142at 33.184 kb on - strand, within H281DRAFT_06142at 33.184 kb on - strand, within H281DRAFT_06142at 33.184 kb on - strand, within H281DRAFT_06142at 33.216 kb on + strandat 33.216 kb on + strand, within H281DRAFT_06142at 33.216 kb on + strand, within H281DRAFT_06142at 33.305 kb on + strandat 33.305 kb on + strandat 33.320 kb on + strandat 33.341 kb on - strandat 33.359 kb on + strandat 33.359 kb on + strandat 33.359 kb on + strandat 33.360 kb on - strandat 33.368 kb on - strandat 33.368 kb on - strandat 33.511 kb on + strandat 33.511 kb on + strandat 33.536 kb on - strandat 33.652 kb on + strandat 33.652 kb on + strandat 33.887 kb on + strand, within H281DRAFT_06143at 33.888 kb on - strand, within H281DRAFT_06143at 34.072 kb on + strand, within H281DRAFT_06143at 34.181 kb on - strand, within H281DRAFT_06143at 34.181 kb on - strand, within H281DRAFT_06143at 34.508 kb on + strandat 34.508 kb on + strandat 34.509 kb on - strandat 34.509 kb on - strandat 34.509 kb on - strandat 34.511 kb on + strandat 34.512 kb on - strandat 34.512 kb on - strandat 34.525 kb on + strandat 34.548 kb on + strandat 34.577 kb on - strandat 34.577 kb on - strandat 34.674 kb on + strandat 34.675 kb on - strandat 34.740 kb on + strand, within H281DRAFT_06144at 34.741 kb on - strand, within H281DRAFT_06144at 34.775 kb on - strand, within H281DRAFT_06144at 34.794 kb on + strand, within H281DRAFT_06144at 34.795 kb on - strand, within H281DRAFT_06144at 34.795 kb on - strand, within H281DRAFT_06144at 34.795 kb on - strandat 34.803 kb on + strand, within H281DRAFT_06144at 34.803 kb on + strand, within H281DRAFT_06144at 34.830 kb on + strand, within H281DRAFT_06144at 34.872 kb on + strand, within H281DRAFT_06144at 34.873 kb on - strand, within H281DRAFT_06144at 34.895 kb on - strand, within H281DRAFT_06144at 34.941 kb on - strand, within H281DRAFT_06144at 34.944 kb on + strand, within H281DRAFT_06144at 34.945 kb on - strand, within H281DRAFT_06144at 34.950 kb on + strand, within H281DRAFT_06144at 34.951 kb on - strand, within H281DRAFT_06144at 34.951 kb on - strand, within H281DRAFT_06144at 34.999 kb on + strand, within H281DRAFT_06144at 34.999 kb on + strand, within H281DRAFT_06144at 34.999 kb on + strand, within H281DRAFT_06144at 34.999 kb on + strand, within H281DRAFT_06144at 35.000 kb on - strand, within H281DRAFT_06144at 35.134 kb on - strand, within H281DRAFT_06144at 35.196 kb on - strand, within H281DRAFT_06144at 35.354 kb on + strand, within H281DRAFT_06144at 35.355 kb on - strand, within H281DRAFT_06144at 35.355 kb on - strand, within H281DRAFT_06144at 35.359 kb on + strand, within H281DRAFT_06144at 35.360 kb on - strand, within H281DRAFT_06144at 35.360 kb on - strand, within H281DRAFT_06144

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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32,666 + H281DRAFT_06141 0.18 -1.4
32,666 + H281DRAFT_06141 0.18 +0.1
32,666 + H281DRAFT_06141 0.18 -1.4
32,666 + H281DRAFT_06141 0.18 -2.0
32,666 + H281DRAFT_06141 0.18 -0.7
32,666 + H281DRAFT_06141 0.18 -1.0
32,712 - H281DRAFT_06141 0.33 -0.1
32,712 - H281DRAFT_06141 0.33 -1.7
32,846 + H281DRAFT_06141 0.79 -0.1
32,847 - H281DRAFT_06141 0.79 +0.9
32,847 - H281DRAFT_06141 0.79 -0.3
32,942 + -1.0
32,942 + -0.3
32,943 - +0.2
32,970 + +0.2
32,971 - -0.7
32,971 - -0.5
33,006 - H281DRAFT_06142 0.11 -0.4
33,183 + H281DRAFT_06142 0.58 +0.3
33,183 + H281DRAFT_06142 0.58 +0.3
33,183 + H281DRAFT_06142 0.58 -0.5
33,183 + H281DRAFT_06142 0.58 +0.0
33,183 + H281DRAFT_06142 0.58 +1.0
33,184 - H281DRAFT_06142 0.59 +0.0
33,184 - H281DRAFT_06142 0.59 +0.1
33,184 - H281DRAFT_06142 0.59 -0.1
33,216 + +1.7
33,216 + H281DRAFT_06142 0.67 +0.3
33,216 + H281DRAFT_06142 0.67 -1.8
33,305 + +0.6
33,305 + -0.2
33,320 + +0.6
33,341 - -0.4
33,359 + +0.4
33,359 + -0.2
33,359 + +0.0
33,360 - +0.7
33,368 - +1.0
33,368 - +0.2
33,511 + +0.6
33,511 + +0.9
33,536 - -0.3
33,652 + +0.1
33,652 + +0.3
33,887 + H281DRAFT_06143 0.32 +0.3
33,888 - H281DRAFT_06143 0.32 -0.8
34,072 + H281DRAFT_06143 0.57 +0.5
34,181 - H281DRAFT_06143 0.72 +0.7
34,181 - H281DRAFT_06143 0.72 +1.7
34,508 + -1.4
34,508 + +2.2
34,509 - +0.0
34,509 - -0.4
34,509 - -0.7
34,511 + -1.5
34,512 - +0.5
34,512 - -0.0
34,525 + -1.3
34,548 + -0.3
34,577 - -0.9
34,577 - -0.9
34,674 + +1.0
34,675 - -0.1
34,740 + H281DRAFT_06144 0.11 +0.5
34,741 - H281DRAFT_06144 0.11 +0.6
34,775 - H281DRAFT_06144 0.13 -0.8
34,794 + H281DRAFT_06144 0.14 +0.3
34,795 - H281DRAFT_06144 0.14 -1.1
34,795 - H281DRAFT_06144 0.14 -0.0
34,795 - +0.7
34,803 + H281DRAFT_06144 0.15 +0.0
34,803 + H281DRAFT_06144 0.15 -1.4
34,830 + H281DRAFT_06144 0.16 +1.2
34,872 + H281DRAFT_06144 0.18 +1.9
34,873 - H281DRAFT_06144 0.18 -0.1
34,895 - H281DRAFT_06144 0.20 -0.1
34,941 - H281DRAFT_06144 0.22 -0.6
34,944 + H281DRAFT_06144 0.22 -0.5
34,945 - H281DRAFT_06144 0.22 -0.4
34,950 + H281DRAFT_06144 0.22 -1.5
34,951 - H281DRAFT_06144 0.22 -2.3
34,951 - H281DRAFT_06144 0.22 -0.3
34,999 + H281DRAFT_06144 0.25 +0.6
34,999 + H281DRAFT_06144 0.25 +1.4
34,999 + H281DRAFT_06144 0.25 +0.7
34,999 + H281DRAFT_06144 0.25 +1.4
35,000 - H281DRAFT_06144 0.25 +0.5
35,134 - H281DRAFT_06144 0.32 +1.1
35,196 - H281DRAFT_06144 0.35 -0.1
35,354 + H281DRAFT_06144 0.44 +1.3
35,355 - H281DRAFT_06144 0.44 +0.7
35,355 - H281DRAFT_06144 0.44 +0.2
35,359 + H281DRAFT_06144 0.44 +0.2
35,360 - H281DRAFT_06144 0.44 +0.2
35,360 - H281DRAFT_06144 0.44 +0.8

Or see this region's nucleotide sequence