Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06137

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06136 and H281DRAFT_06137 are separated by 164 nucleotidesH281DRAFT_06137 and H281DRAFT_06138 are separated by 120 nucleotides H281DRAFT_06136: H281DRAFT_06136 - D-galactonate transporter, at 26,069 to 27,376 _06136 H281DRAFT_06137: H281DRAFT_06137 - dihydroxyacid dehydratase (EC 4.2.1.9), at 27,541 to 29,292 _06137 H281DRAFT_06138: H281DRAFT_06138 - DNA-binding transcriptional regulator, LysR family, at 29,413 to 30,309 _06138 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2at 26.542 kb on + strand, within H281DRAFT_06136at 26.938 kb on + strand, within H281DRAFT_06136at 26.939 kb on - strand, within H281DRAFT_06136at 27.061 kb on + strand, within H281DRAFT_06136at 27.061 kb on + strand, within H281DRAFT_06136at 27.091 kb on - strand, within H281DRAFT_06136at 27.091 kb on - strand, within H281DRAFT_06136at 27.300 kb on - strandat 27.300 kb on - strandat 27.431 kb on - strandat 27.434 kb on + strandat 27.856 kb on + strand, within H281DRAFT_06137at 27.856 kb on + strand, within H281DRAFT_06137at 27.857 kb on - strand, within H281DRAFT_06137at 27.857 kb on - strand, within H281DRAFT_06137at 27.857 kb on - strand, within H281DRAFT_06137at 28.057 kb on - strand, within H281DRAFT_06137at 28.073 kb on - strand, within H281DRAFT_06137at 28.073 kb on - strand, within H281DRAFT_06137at 28.406 kb on + strand, within H281DRAFT_06137at 28.407 kb on - strand, within H281DRAFT_06137at 28.450 kb on - strand, within H281DRAFT_06137at 28.450 kb on - strand, within H281DRAFT_06137at 28.513 kb on + strand, within H281DRAFT_06137at 28.514 kb on - strand, within H281DRAFT_06137at 28.514 kb on - strand, within H281DRAFT_06137at 28.514 kb on - strand, within H281DRAFT_06137at 28.514 kb on - strand, within H281DRAFT_06137at 28.514 kb on - strand, within H281DRAFT_06137at 28.515 kb on + strand, within H281DRAFT_06137at 28.515 kb on + strand, within H281DRAFT_06137at 28.516 kb on - strand, within H281DRAFT_06137at 28.516 kb on - strand, within H281DRAFT_06137at 28.516 kb on - strand, within H281DRAFT_06137at 28.516 kb on - strand, within H281DRAFT_06137at 28.599 kb on - strand, within H281DRAFT_06137at 28.680 kb on + strand, within H281DRAFT_06137at 28.680 kb on + strand, within H281DRAFT_06137at 28.680 kb on + strand, within H281DRAFT_06137at 28.681 kb on - strand, within H281DRAFT_06137at 28.681 kb on - strand, within H281DRAFT_06137at 28.681 kb on - strand, within H281DRAFT_06137at 28.685 kb on - strand, within H281DRAFT_06137at 28.796 kb on + strand, within H281DRAFT_06137at 29.028 kb on + strand, within H281DRAFT_06137at 29.062 kb on + strand, within H281DRAFT_06137at 29.062 kb on + strandat 29.063 kb on - strand, within H281DRAFT_06137at 29.063 kb on - strand, within H281DRAFT_06137at 29.360 kb on + strandat 29.361 kb on - strandat 29.563 kb on - strand, within H281DRAFT_06138at 29.738 kb on + strand, within H281DRAFT_06138at 29.931 kb on + strand, within H281DRAFT_06138at 29.973 kb on - strand, within H281DRAFT_06138at 29.973 kb on - strand, within H281DRAFT_06138at 30.034 kb on + strand, within H281DRAFT_06138at 30.035 kb on - strand, within H281DRAFT_06138at 30.035 kb on - strand, within H281DRAFT_06138at 30.035 kb on - strand, within H281DRAFT_06138

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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26,542 + H281DRAFT_06136 0.36 -0.5
26,938 + H281DRAFT_06136 0.66 +0.2
26,939 - H281DRAFT_06136 0.67 +0.5
27,061 + H281DRAFT_06136 0.76 +1.2
27,061 + H281DRAFT_06136 0.76 +1.4
27,091 - H281DRAFT_06136 0.78 -0.5
27,091 - H281DRAFT_06136 0.78 -0.1
27,300 - +0.3
27,300 - +0.7
27,431 - -0.8
27,434 + -0.3
27,856 + H281DRAFT_06137 0.18 -0.2
27,856 + H281DRAFT_06137 0.18 -0.2
27,857 - H281DRAFT_06137 0.18 +0.0
27,857 - H281DRAFT_06137 0.18 +0.2
27,857 - H281DRAFT_06137 0.18 +0.3
28,057 - H281DRAFT_06137 0.29 -0.5
28,073 - H281DRAFT_06137 0.30 -0.7
28,073 - H281DRAFT_06137 0.30 +1.6
28,406 + H281DRAFT_06137 0.49 -0.4
28,407 - H281DRAFT_06137 0.49 +0.5
28,450 - H281DRAFT_06137 0.52 +0.4
28,450 - H281DRAFT_06137 0.52 +1.1
28,513 + H281DRAFT_06137 0.55 +0.3
28,514 - H281DRAFT_06137 0.56 -0.2
28,514 - H281DRAFT_06137 0.56 +0.4
28,514 - H281DRAFT_06137 0.56 -1.1
28,514 - H281DRAFT_06137 0.56 +0.6
28,514 - H281DRAFT_06137 0.56 +0.0
28,515 + H281DRAFT_06137 0.56 -0.4
28,515 + H281DRAFT_06137 0.56 -0.6
28,516 - H281DRAFT_06137 0.56 -0.7
28,516 - H281DRAFT_06137 0.56 +0.9
28,516 - H281DRAFT_06137 0.56 -0.1
28,516 - H281DRAFT_06137 0.56 +0.1
28,599 - H281DRAFT_06137 0.60 -0.1
28,680 + H281DRAFT_06137 0.65 +0.3
28,680 + H281DRAFT_06137 0.65 -0.7
28,680 + H281DRAFT_06137 0.65 +0.4
28,681 - H281DRAFT_06137 0.65 -0.2
28,681 - H281DRAFT_06137 0.65 -0.2
28,681 - H281DRAFT_06137 0.65 -0.3
28,685 - H281DRAFT_06137 0.65 -0.2
28,796 + H281DRAFT_06137 0.72 +0.5
29,028 + H281DRAFT_06137 0.85 -0.3
29,062 + H281DRAFT_06137 0.87 +1.6
29,062 + -0.9
29,063 - H281DRAFT_06137 0.87 -0.6
29,063 - H281DRAFT_06137 0.87 -2.2
29,360 + +0.6
29,361 - +1.9
29,563 - H281DRAFT_06138 0.17 -1.0
29,738 + H281DRAFT_06138 0.36 -0.4
29,931 + H281DRAFT_06138 0.58 +0.6
29,973 - H281DRAFT_06138 0.62 -0.5
29,973 - H281DRAFT_06138 0.62 +0.1
30,034 + H281DRAFT_06138 0.69 +0.3
30,035 - H281DRAFT_06138 0.69 +0.1
30,035 - H281DRAFT_06138 0.69 -0.0
30,035 - H281DRAFT_06138 0.69 +0.1

Or see this region's nucleotide sequence