Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05870 and H281DRAFT_05871 are separated by 13 nucleotides H281DRAFT_05871 and H281DRAFT_05872 are separated by 10 nucleotides H281DRAFT_05872 and H281DRAFT_05873 overlap by 4 nucleotides
H281DRAFT_05870: H281DRAFT_05870 - amino acid ABC transporter substrate-binding protein, PAAT family, at 6,941 to 7,792
_05870
H281DRAFT_05871: H281DRAFT_05871 - amino acid ABC transporter membrane protein 1, PAAT family (TC 3.A.1.3.-), at 7,806 to 8,522
_05871
H281DRAFT_05872: H281DRAFT_05872 - amino acid ABC transporter membrane protein 2, PAAT family, at 8,533 to 9,177
_05872
H281DRAFT_05873: H281DRAFT_05873 - amino acid ABC transporter ATP-binding protein, PAAT family, at 9,174 to 9,926
_05873
Position (kb) 7
8
9 Strain fitness (log2 ratio) -2
-1
0
1
2 at 6.834 kb on + strand at 7.126 kb on + strand, within H281DRAFT_05870 at 7.127 kb on - strand, within H281DRAFT_05870 at 7.640 kb on + strand, within H281DRAFT_05870 at 7.641 kb on - strand, within H281DRAFT_05870 at 7.739 kb on + strand at 7.837 kb on - strand at 7.837 kb on - strand at 7.978 kb on - strand, within H281DRAFT_05871 at 7.997 kb on + strand, within H281DRAFT_05871 at 8.109 kb on + strand, within H281DRAFT_05871 at 8.109 kb on + strand, within H281DRAFT_05871 at 8.110 kb on - strand, within H281DRAFT_05871 at 8.260 kb on - strand, within H281DRAFT_05871 at 8.359 kb on - strand, within H281DRAFT_05871 at 8.600 kb on + strand, within H281DRAFT_05872 at 8.750 kb on - strand, within H281DRAFT_05872 at 8.764 kb on + strand, within H281DRAFT_05872 at 8.830 kb on + strand, within H281DRAFT_05872 at 8.831 kb on - strand, within H281DRAFT_05872 at 8.831 kb on - strand, within H281DRAFT_05872 at 8.916 kb on - strand, within H281DRAFT_05872 at 9.113 kb on - strand at 9.171 kb on + strand at 9.171 kb on + strand at 9.172 kb on - strand at 9.286 kb on + strand, within H281DRAFT_05873
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 6,834 + +2.0 7,126 + H281DRAFT_05870 0.22 +0.1 7,127 - H281DRAFT_05870 0.22 +0.8 7,640 + H281DRAFT_05870 0.82 +0.1 7,641 - H281DRAFT_05870 0.82 +0.1 7,739 + -0.1 7,837 - +0.5 7,837 - +0.0 7,978 - H281DRAFT_05871 0.24 -1.1 7,997 + H281DRAFT_05871 0.27 +0.2 8,109 + H281DRAFT_05871 0.42 -0.5 8,109 + H281DRAFT_05871 0.42 +1.3 8,110 - H281DRAFT_05871 0.42 -2.1 8,260 - H281DRAFT_05871 0.63 -0.3 8,359 - H281DRAFT_05871 0.77 -0.3 8,600 + H281DRAFT_05872 0.10 +0.1 8,750 - H281DRAFT_05872 0.34 -0.1 8,764 + H281DRAFT_05872 0.36 -0.5 8,830 + H281DRAFT_05872 0.46 +0.3 8,831 - H281DRAFT_05872 0.46 -0.2 8,831 - H281DRAFT_05872 0.46 +0.5 8,916 - H281DRAFT_05872 0.59 -0.7 9,113 - -0.9 9,171 + -1.1 9,171 + +0.1 9,172 - -0.2 9,286 + H281DRAFT_05873 0.15 -0.9
Or see this region's nucleotide sequence