Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05744

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05742 and H281DRAFT_05743 are separated by 63 nucleotidesH281DRAFT_05743 and H281DRAFT_05744 are separated by 42 nucleotidesH281DRAFT_05744 and H281DRAFT_05745 are separated by 201 nucleotides H281DRAFT_05742: H281DRAFT_05742 - CheA signal transduction histidine kinase, at 13,782 to 16,058 _05742 H281DRAFT_05743: H281DRAFT_05743 - CheW protein, at 16,122 to 16,652 _05743 H281DRAFT_05744: H281DRAFT_05744 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 16,695 to 18,548 _05744 H281DRAFT_05745: H281DRAFT_05745 - MCP methyltransferase, CheR-type, at 18,750 to 19,682 _05745 Position (kb) 16 17 18 19Strain fitness (log2 ratio) -1 0 1 2at 15.720 kb on + strand, within H281DRAFT_05742at 15.720 kb on + strand, within H281DRAFT_05742at 15.721 kb on - strand, within H281DRAFT_05742at 15.721 kb on - strand, within H281DRAFT_05742at 16.078 kb on - strandat 16.093 kb on + strandat 16.094 kb on - strandat 16.098 kb on + strandat 16.098 kb on + strandat 16.119 kb on - strandat 16.223 kb on + strand, within H281DRAFT_05743at 16.242 kb on + strand, within H281DRAFT_05743at 16.545 kb on + strand, within H281DRAFT_05743at 16.545 kb on + strand, within H281DRAFT_05743at 16.650 kb on + strandat 16.651 kb on - strandat 16.699 kb on + strandat 16.700 kb on - strandat 16.700 kb on - strandat 16.700 kb on - strandat 16.700 kb on - strandat 16.774 kb on + strandat 16.872 kb on + strandat 16.872 kb on + strandat 16.873 kb on - strandat 16.975 kb on - strand, within H281DRAFT_05744at 17.178 kb on + strand, within H281DRAFT_05744at 17.723 kb on - strand, within H281DRAFT_05744at 18.908 kb on + strand, within H281DRAFT_05745at 18.915 kb on + strand, within H281DRAFT_05745at 18.915 kb on + strand, within H281DRAFT_05745at 18.916 kb on - strand, within H281DRAFT_05745at 19.265 kb on + strand, within H281DRAFT_05745at 19.266 kb on - strand, within H281DRAFT_05745at 19.269 kb on + strand, within H281DRAFT_05745at 19.269 kb on + strand, within H281DRAFT_05745at 19.270 kb on - strand, within H281DRAFT_05745at 19.270 kb on - strand, within H281DRAFT_05745at 19.270 kb on - strand, within H281DRAFT_05745at 19.420 kb on - strand, within H281DRAFT_05745at 19.420 kb on - strand, within H281DRAFT_05745at 19.471 kb on - strand, within H281DRAFT_05745

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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15,720 + H281DRAFT_05742 0.85 -0.5
15,720 + H281DRAFT_05742 0.85 +0.7
15,721 - H281DRAFT_05742 0.85 +0.8
15,721 - H281DRAFT_05742 0.85 +2.3
16,078 - -0.7
16,093 + +0.9
16,094 - -0.6
16,098 + -0.2
16,098 + -0.4
16,119 - +0.4
16,223 + H281DRAFT_05743 0.19 +0.7
16,242 + H281DRAFT_05743 0.23 +0.2
16,545 + H281DRAFT_05743 0.80 +0.2
16,545 + H281DRAFT_05743 0.80 +1.8
16,650 + -0.7
16,651 - -1.6
16,699 + -0.3
16,700 - -1.6
16,700 - -1.2
16,700 - -1.0
16,700 - -0.2
16,774 + -0.1
16,872 + +0.4
16,872 + -1.1
16,873 - +0.7
16,975 - H281DRAFT_05744 0.15 +1.1
17,178 + H281DRAFT_05744 0.26 +0.2
17,723 - H281DRAFT_05744 0.55 +1.7
18,908 + H281DRAFT_05745 0.17 +0.3
18,915 + H281DRAFT_05745 0.18 -0.4
18,915 + H281DRAFT_05745 0.18 +0.1
18,916 - H281DRAFT_05745 0.18 -1.1
19,265 + H281DRAFT_05745 0.55 +0.3
19,266 - H281DRAFT_05745 0.55 +0.3
19,269 + H281DRAFT_05745 0.56 +0.8
19,269 + H281DRAFT_05745 0.56 +0.4
19,270 - H281DRAFT_05745 0.56 -0.5
19,270 - H281DRAFT_05745 0.56 -0.2
19,270 - H281DRAFT_05745 0.56 -0.4
19,420 - H281DRAFT_05745 0.72 -0.6
19,420 - H281DRAFT_05745 0.72 -0.7
19,471 - H281DRAFT_05745 0.77 -0.4

Or see this region's nucleotide sequence