Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05359

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05358 and H281DRAFT_05359 are separated by 75 nucleotidesH281DRAFT_05359 and H281DRAFT_05360 overlap by 4 nucleotides H281DRAFT_05358: H281DRAFT_05358 - glucose-6-phosphate 1-dehydrogenase, at 110,843 to 112,324 _05358 H281DRAFT_05359: H281DRAFT_05359 - type VI secretion system protein ImpK, at 112,400 to 113,179 _05359 H281DRAFT_05360: H281DRAFT_05360 - type VI secretion system protein ImpJ, at 113,176 to 114,522 _05360 Position (kb) 112 113 114Strain fitness (log2 ratio) -2 -1 0 1at 111.470 kb on + strand, within H281DRAFT_05358at 111.470 kb on + strand, within H281DRAFT_05358at 111.471 kb on - strand, within H281DRAFT_05358at 111.471 kb on - strand, within H281DRAFT_05358at 111.473 kb on - strand, within H281DRAFT_05358at 111.720 kb on - strand, within H281DRAFT_05358at 111.735 kb on + strand, within H281DRAFT_05358at 111.758 kb on + strand, within H281DRAFT_05358at 111.759 kb on - strand, within H281DRAFT_05358at 111.823 kb on + strand, within H281DRAFT_05358at 111.891 kb on + strand, within H281DRAFT_05358at 111.956 kb on + strand, within H281DRAFT_05358at 112.106 kb on + strand, within H281DRAFT_05358at 112.107 kb on - strand, within H281DRAFT_05358at 112.241 kb on + strandat 112.242 kb on - strandat 112.242 kb on - strandat 112.323 kb on - strandat 112.323 kb on - strandat 112.381 kb on + strandat 112.381 kb on + strandat 112.494 kb on + strand, within H281DRAFT_05359at 112.495 kb on - strand, within H281DRAFT_05359at 112.495 kb on - strand, within H281DRAFT_05359at 112.495 kb on - strand, within H281DRAFT_05359at 112.674 kb on + strand, within H281DRAFT_05359at 112.674 kb on + strand, within H281DRAFT_05359at 112.704 kb on + strand, within H281DRAFT_05359at 112.704 kb on + strand, within H281DRAFT_05359at 112.704 kb on + strand, within H281DRAFT_05359at 112.704 kb on + strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.705 kb on - strand, within H281DRAFT_05359at 112.795 kb on - strand, within H281DRAFT_05359at 112.935 kb on + strand, within H281DRAFT_05359at 112.936 kb on - strand, within H281DRAFT_05359at 112.936 kb on - strand, within H281DRAFT_05359at 113.077 kb on - strand, within H281DRAFT_05359at 113.077 kb on - strand, within H281DRAFT_05359at 113.106 kb on + strandat 113.107 kb on - strandat 113.172 kb on + strandat 113.231 kb on + strandat 113.231 kb on + strandat 113.231 kb on + strandat 113.231 kb on + strandat 113.231 kb on + strandat 113.232 kb on - strandat 113.232 kb on - strandat 113.232 kb on - strandat 113.232 kb on - strandat 113.267 kb on + strandat 113.268 kb on - strandat 113.297 kb on + strandat 113.298 kb on - strandat 113.345 kb on + strand, within H281DRAFT_05360at 113.472 kb on + strand, within H281DRAFT_05360at 113.473 kb on - strand, within H281DRAFT_05360at 113.474 kb on + strand, within H281DRAFT_05360at 113.474 kb on + strand, within H281DRAFT_05360at 113.475 kb on - strand, within H281DRAFT_05360at 113.475 kb on - strand, within H281DRAFT_05360at 113.475 kb on - strand, within H281DRAFT_05360at 113.475 kb on - strand, within H281DRAFT_05360at 113.562 kb on - strand, within H281DRAFT_05360at 113.562 kb on - strand, within H281DRAFT_05360at 113.604 kb on + strand, within H281DRAFT_05360at 113.605 kb on - strand, within H281DRAFT_05360at 113.646 kb on - strand, within H281DRAFT_05360at 113.669 kb on + strand, within H281DRAFT_05360at 113.669 kb on + strand, within H281DRAFT_05360at 113.670 kb on - strand, within H281DRAFT_05360at 113.670 kb on - strand, within H281DRAFT_05360at 113.753 kb on + strand, within H281DRAFT_05360at 113.754 kb on - strand, within H281DRAFT_05360at 113.868 kb on - strand, within H281DRAFT_05360at 113.870 kb on - strand, within H281DRAFT_05360at 114.143 kb on + strand, within H281DRAFT_05360at 114.143 kb on + strand, within H281DRAFT_05360at 114.143 kb on + strand, within H281DRAFT_05360at 114.179 kb on + strand, within H281DRAFT_05360at 114.179 kb on + strand, within H281DRAFT_05360at 114.179 kb on + strand, within H281DRAFT_05360at 114.179 kb on + strand, within H281DRAFT_05360

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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111,470 + H281DRAFT_05358 0.42 -1.0
111,470 + H281DRAFT_05358 0.42 +1.5
111,471 - H281DRAFT_05358 0.42 +0.1
111,471 - H281DRAFT_05358 0.42 +0.5
111,473 - H281DRAFT_05358 0.43 +0.6
111,720 - H281DRAFT_05358 0.59 -0.0
111,735 + H281DRAFT_05358 0.60 +1.3
111,758 + H281DRAFT_05358 0.62 -0.1
111,759 - H281DRAFT_05358 0.62 -0.4
111,823 + H281DRAFT_05358 0.66 -0.1
111,891 + H281DRAFT_05358 0.71 -1.3
111,956 + H281DRAFT_05358 0.75 -0.2
112,106 + H281DRAFT_05358 0.85 +1.0
112,107 - H281DRAFT_05358 0.85 +0.3
112,241 + -0.7
112,242 - -0.2
112,242 - -0.3
112,323 - -0.3
112,323 - +0.3
112,381 + +0.3
112,381 + +0.4
112,494 + H281DRAFT_05359 0.12 +0.1
112,495 - H281DRAFT_05359 0.12 +0.3
112,495 - H281DRAFT_05359 0.12 +0.3
112,495 - H281DRAFT_05359 0.12 -0.2
112,674 + H281DRAFT_05359 0.35 -0.4
112,674 + H281DRAFT_05359 0.35 +0.0
112,704 + H281DRAFT_05359 0.39 -0.1
112,704 + H281DRAFT_05359 0.39 +0.4
112,704 + H281DRAFT_05359 0.39 +0.7
112,704 + H281DRAFT_05359 0.39 +1.1
112,705 - H281DRAFT_05359 0.39 -0.3
112,705 - H281DRAFT_05359 0.39 +0.5
112,705 - H281DRAFT_05359 0.39 +0.3
112,705 - H281DRAFT_05359 0.39 +0.1
112,705 - H281DRAFT_05359 0.39 -0.2
112,705 - H281DRAFT_05359 0.39 +0.4
112,705 - H281DRAFT_05359 0.39 +0.5
112,705 - H281DRAFT_05359 0.39 +0.7
112,795 - H281DRAFT_05359 0.51 -0.1
112,935 + H281DRAFT_05359 0.69 +0.1
112,936 - H281DRAFT_05359 0.69 -1.7
112,936 - H281DRAFT_05359 0.69 +0.6
113,077 - H281DRAFT_05359 0.87 +0.2
113,077 - H281DRAFT_05359 0.87 +0.3
113,106 + -0.1
113,107 - +0.5
113,172 + +0.5
113,231 + -0.7
113,231 + +0.7
113,231 + +0.2
113,231 + +0.2
113,231 + -2.5
113,232 - +0.6
113,232 - +0.2
113,232 - +0.2
113,232 - +0.2
113,267 + +0.4
113,268 - +0.3
113,297 + +0.3
113,298 - +0.2
113,345 + H281DRAFT_05360 0.13 +0.3
113,472 + H281DRAFT_05360 0.22 -1.0
113,473 - H281DRAFT_05360 0.22 +0.1
113,474 + H281DRAFT_05360 0.22 -0.2
113,474 + H281DRAFT_05360 0.22 -0.4
113,475 - H281DRAFT_05360 0.22 +0.5
113,475 - H281DRAFT_05360 0.22 +0.4
113,475 - H281DRAFT_05360 0.22 -1.5
113,475 - H281DRAFT_05360 0.22 +1.1
113,562 - H281DRAFT_05360 0.29 -0.2
113,562 - H281DRAFT_05360 0.29 +0.5
113,604 + H281DRAFT_05360 0.32 +0.6
113,605 - H281DRAFT_05360 0.32 +0.4
113,646 - H281DRAFT_05360 0.35 +0.8
113,669 + H281DRAFT_05360 0.37 +0.1
113,669 + H281DRAFT_05360 0.37 -0.1
113,670 - H281DRAFT_05360 0.37 +0.5
113,670 - H281DRAFT_05360 0.37 +0.7
113,753 + H281DRAFT_05360 0.43 +1.3
113,754 - H281DRAFT_05360 0.43 +0.5
113,868 - H281DRAFT_05360 0.51 -0.1
113,870 - H281DRAFT_05360 0.52 +0.7
114,143 + H281DRAFT_05360 0.72 +0.7
114,143 + H281DRAFT_05360 0.72 +0.3
114,143 + H281DRAFT_05360 0.72 +0.1
114,179 + H281DRAFT_05360 0.74 +0.2
114,179 + H281DRAFT_05360 0.74 +0.8
114,179 + H281DRAFT_05360 0.74 +0.5
114,179 + H281DRAFT_05360 0.74 +0.1

Or see this region's nucleotide sequence