Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05350

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05348 and H281DRAFT_05349 are separated by 220 nucleotidesH281DRAFT_05349 and H281DRAFT_05350 overlap by 31 nucleotidesH281DRAFT_05350 and H281DRAFT_05351 are separated by 27 nucleotides H281DRAFT_05348: H281DRAFT_05348 - Hypoxanthine phosphoribosyltransferase, at 100,310 to 101,263 _05348 H281DRAFT_05349: H281DRAFT_05349 - hypothetical protein, at 101,484 to 102,026 _05349 H281DRAFT_05350: H281DRAFT_05350 - Signal transduction histidine kinase, at 101,996 to 103,846 _05350 H281DRAFT_05351: H281DRAFT_05351 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 103,874 to 104,728 _05351 Position (kb) 101 102 103 104Strain fitness (log2 ratio) -2 -1 0 1 2 3at 101.379 kb on - strandat 101.379 kb on - strandat 101.379 kb on - strandat 101.473 kb on + strandat 101.473 kb on + strandat 101.494 kb on + strandat 101.665 kb on - strand, within H281DRAFT_05349at 101.768 kb on + strand, within H281DRAFT_05349at 101.827 kb on - strand, within H281DRAFT_05349at 101.832 kb on + strand, within H281DRAFT_05349at 101.832 kb on + strand, within H281DRAFT_05349at 102.052 kb on - strandat 102.162 kb on - strandat 102.173 kb on + strandat 102.174 kb on - strandat 103.118 kb on + strand, within H281DRAFT_05350at 103.180 kb on - strand, within H281DRAFT_05350at 103.367 kb on - strand, within H281DRAFT_05350at 103.367 kb on - strand, within H281DRAFT_05350at 103.519 kb on + strand, within H281DRAFT_05350at 103.776 kb on + strandat 103.791 kb on - strandat 103.954 kb on - strandat 104.301 kb on + strand, within H281DRAFT_05351at 104.313 kb on + strand, within H281DRAFT_05351at 104.526 kb on + strand, within H281DRAFT_05351at 104.728 kb on + strandat 104.728 kb on + strandat 104.728 kb on + strandat 104.729 kb on - strandat 104.729 kb on - strandat 104.782 kb on - strandat 104.819 kb on - strandat 104.840 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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101,379 - -0.1
101,379 - -1.5
101,379 - +0.3
101,473 + +0.5
101,473 + -1.5
101,494 + +0.4
101,665 - H281DRAFT_05349 0.33 +0.3
101,768 + H281DRAFT_05349 0.52 +0.1
101,827 - H281DRAFT_05349 0.63 +0.1
101,832 + H281DRAFT_05349 0.64 -1.4
101,832 + H281DRAFT_05349 0.64 -1.0
102,052 - -0.3
102,162 - -1.8
102,173 + -0.7
102,174 - +2.7
103,118 + H281DRAFT_05350 0.61 -0.6
103,180 - H281DRAFT_05350 0.64 -1.2
103,367 - H281DRAFT_05350 0.74 -1.7
103,367 - H281DRAFT_05350 0.74 -2.0
103,519 + H281DRAFT_05350 0.82 -0.2
103,776 + +0.3
103,791 - -0.0
103,954 - -1.4
104,301 + H281DRAFT_05351 0.50 -1.2
104,313 + H281DRAFT_05351 0.51 -1.1
104,526 + H281DRAFT_05351 0.76 -0.4
104,728 + +2.1
104,728 + +3.7
104,728 + +0.1
104,729 - +0.9
104,729 - -0.3
104,782 - +0.2
104,819 - -0.0
104,840 - +0.9

Or see this region's nucleotide sequence