Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05122 and H281DRAFT_05123 are separated by 630 nucleotides H281DRAFT_05123 and H281DRAFT_05124 are separated by 14 nucleotides H281DRAFT_05124 and H281DRAFT_05125 overlap by 4 nucleotides
H281DRAFT_05122: H281DRAFT_05122 - host factor-I protein, at 71,705 to 72,172
_05122
H281DRAFT_05123: H281DRAFT_05123 - hypothetical protein, at 72,803 to 72,940
_05123
H281DRAFT_05124: H281DRAFT_05124 - RNA polymerase sigma-70 factor, ECF subfamily, at 72,955 to 73,482
_05124
H281DRAFT_05125: H281DRAFT_05125 - Transmembrane transcriptional regulator (anti-sigma factor RsiW), at 73,479 to 74,342
_05125
Position (kb) 72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 71.850 kb on + strand, within H281DRAFT_05122 at 72.003 kb on + strand, within H281DRAFT_05122 at 72.003 kb on + strand, within H281DRAFT_05122 at 72.003 kb on + strand, within H281DRAFT_05122 at 72.003 kb on + strand, within H281DRAFT_05122 at 72.004 kb on - strand, within H281DRAFT_05122 at 72.004 kb on - strand, within H281DRAFT_05122 at 72.096 kb on + strand, within H281DRAFT_05122 at 72.186 kb on + strand at 72.259 kb on + strand at 72.260 kb on - strand at 72.260 kb on - strand at 72.279 kb on + strand at 72.279 kb on + strand at 72.280 kb on - strand at 72.291 kb on - strand at 72.295 kb on - strand at 72.413 kb on + strand at 72.414 kb on - strand at 72.414 kb on - strand at 72.451 kb on + strand at 72.451 kb on + strand at 72.532 kb on - strand at 72.581 kb on - strand at 72.727 kb on + strand at 72.727 kb on + strand at 72.727 kb on + strand at 72.728 kb on - strand at 72.761 kb on + strand at 72.761 kb on + strand at 72.777 kb on - strand at 72.777 kb on - strand at 72.777 kb on - strand at 72.802 kb on + strand at 72.834 kb on + strand, within H281DRAFT_05123 at 72.922 kb on + strand, within H281DRAFT_05123 at 73.105 kb on - strand, within H281DRAFT_05124 at 73.144 kb on + strand, within H281DRAFT_05124 at 73.145 kb on - strand, within H281DRAFT_05124 at 73.145 kb on - strand, within H281DRAFT_05124 at 73.145 kb on - strand, within H281DRAFT_05124 at 73.145 kb on - strand, within H281DRAFT_05124 at 73.270 kb on + strand, within H281DRAFT_05124 at 73.270 kb on + strand, within H281DRAFT_05124 at 73.270 kb on + strand, within H281DRAFT_05124 at 73.271 kb on - strand, within H281DRAFT_05124 at 73.446 kb on + strand at 73.657 kb on + strand, within H281DRAFT_05125 at 73.658 kb on - strand, within H281DRAFT_05125 at 73.928 kb on - strand, within H281DRAFT_05125 at 73.933 kb on - strand, within H281DRAFT_05125
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 71,850 + H281DRAFT_05122 0.31 +0.5 72,003 + H281DRAFT_05122 0.64 -1.7 72,003 + H281DRAFT_05122 0.64 -0.1 72,003 + H281DRAFT_05122 0.64 +1.1 72,003 + H281DRAFT_05122 0.64 +0.5 72,004 - H281DRAFT_05122 0.64 +0.2 72,004 - H281DRAFT_05122 0.64 -0.5 72,096 + H281DRAFT_05122 0.84 -0.3 72,186 + -0.1 72,259 + -0.2 72,260 - +0.5 72,260 - +0.6 72,279 + +0.1 72,279 + -1.2 72,280 - +0.9 72,291 - +0.1 72,295 - +0.8 72,413 + +1.9 72,414 - -0.3 72,414 - +0.1 72,451 + -0.9 72,451 + +0.4 72,532 - +0.6 72,581 - -0.2 72,727 + +0.5 72,727 + -0.8 72,727 + +0.1 72,728 - +0.1 72,761 + +0.4 72,761 + -0.7 72,777 - -0.6 72,777 - -0.1 72,777 - -0.3 72,802 + +0.1 72,834 + H281DRAFT_05123 0.22 +0.4 72,922 + H281DRAFT_05123 0.86 +1.7 73,105 - H281DRAFT_05124 0.28 +2.0 73,144 + H281DRAFT_05124 0.36 +0.0 73,145 - H281DRAFT_05124 0.36 -3.0 73,145 - H281DRAFT_05124 0.36 -0.3 73,145 - H281DRAFT_05124 0.36 +0.9 73,145 - H281DRAFT_05124 0.36 -0.5 73,270 + H281DRAFT_05124 0.60 +0.7 73,270 + H281DRAFT_05124 0.60 -0.4 73,270 + H281DRAFT_05124 0.60 +0.7 73,271 - H281DRAFT_05124 0.60 -0.4 73,446 + -0.0 73,657 + H281DRAFT_05125 0.21 -0.2 73,658 - H281DRAFT_05125 0.21 -0.0 73,928 - H281DRAFT_05125 0.52 +0.6 73,933 - H281DRAFT_05125 0.53 -0.6
Or see this region's nucleotide sequence