Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04933

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04931 and H281DRAFT_04932 are separated by 18 nucleotidesH281DRAFT_04932 and H281DRAFT_04933 are separated by 302 nucleotidesH281DRAFT_04933 and H281DRAFT_04934 are separated by 256 nucleotidesH281DRAFT_04934 and H281DRAFT_04935 are separated by 161 nucleotides H281DRAFT_04931: H281DRAFT_04931 - Surfactin synthase thioesterase subunit, at 113,917 to 114,735 _04931 H281DRAFT_04932: H281DRAFT_04932 - MbtH protein, at 114,754 to 114,987 _04932 H281DRAFT_04933: H281DRAFT_04933 - Nitroreductase, at 115,290 to 115,913 _04933 H281DRAFT_04934: H281DRAFT_04934 - Sensors of blue-light using FAD, at 116,170 to 116,685 _04934 H281DRAFT_04935: H281DRAFT_04935 - D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4), at 116,847 to 118,499 _04935 Position (kb) 115 116Strain fitness (log2 ratio) -2 -1 0 1 2at 114.822 kb on + strand, within H281DRAFT_04932at 114.911 kb on + strand, within H281DRAFT_04932at 114.930 kb on - strand, within H281DRAFT_04932at 114.946 kb on + strand, within H281DRAFT_04932at 115.009 kb on + strandat 115.009 kb on + strandat 115.010 kb on - strandat 115.191 kb on + strandat 115.192 kb on - strandat 115.281 kb on + strandat 115.295 kb on + strandat 115.295 kb on + strandat 115.295 kb on + strandat 115.295 kb on + strandat 115.296 kb on - strandat 115.296 kb on - strandat 115.296 kb on - strandat 115.417 kb on + strand, within H281DRAFT_04933at 115.882 kb on + strandat 116.129 kb on - strandat 116.132 kb on - strandat 116.170 kb on - strandat 116.170 kb on - strandat 116.261 kb on + strand, within H281DRAFT_04934at 116.498 kb on - strand, within H281DRAFT_04934

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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114,822 + H281DRAFT_04932 0.29 +1.3
114,911 + H281DRAFT_04932 0.67 +0.2
114,930 - H281DRAFT_04932 0.75 -0.3
114,946 + H281DRAFT_04932 0.82 -0.0
115,009 + +0.9
115,009 + -0.1
115,010 - +1.9
115,191 + -0.5
115,192 - +1.0
115,281 + +0.5
115,295 + +0.8
115,295 + -2.5
115,295 + -0.1
115,295 + +0.1
115,296 - -0.8
115,296 - -1.3
115,296 - -0.1
115,417 + H281DRAFT_04933 0.20 +0.9
115,882 + +0.0
116,129 - -0.5
116,132 - +0.6
116,170 - +0.1
116,170 - +1.5
116,261 + H281DRAFT_04934 0.18 +0.2
116,498 - H281DRAFT_04934 0.64 -0.4

Or see this region's nucleotide sequence