Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04863

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04862 and H281DRAFT_04863 are separated by 156 nucleotidesH281DRAFT_04863 and H281DRAFT_04864 are separated by 412 nucleotides H281DRAFT_04862: H281DRAFT_04862 - Pyridoxal kinase, at 3,204 to 4,070 _04862 H281DRAFT_04863: H281DRAFT_04863 - hypothetical protein, at 4,227 to 4,688 _04863 H281DRAFT_04864: H281DRAFT_04864 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 5,101 to 6,252 _04864 Position (kb) 4 5Strain fitness (log2 ratio) -2 -1 0 1at 3.285 kb on - strandat 3.528 kb on + strand, within H281DRAFT_04862at 4.239 kb on - strandat 4.277 kb on + strand, within H281DRAFT_04863at 4.387 kb on - strand, within H281DRAFT_04863at 4.387 kb on - strand, within H281DRAFT_04863at 4.492 kb on - strand, within H281DRAFT_04863at 4.817 kb on + strandat 4.817 kb on + strandat 4.818 kb on - strandat 4.818 kb on - strandat 4.818 kb on - strandat 5.022 kb on + strandat 5.022 kb on + strandat 5.023 kb on - strandat 5.089 kb on + strandat 5.109 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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3,285 - +0.6
3,528 + H281DRAFT_04862 0.37 +0.8
4,239 - -0.2
4,277 + H281DRAFT_04863 0.11 -0.3
4,387 - H281DRAFT_04863 0.35 +1.2
4,387 - H281DRAFT_04863 0.35 +0.7
4,492 - H281DRAFT_04863 0.57 +0.7
4,817 + +0.2
4,817 + -1.5
4,818 - -0.3
4,818 - +0.6
4,818 - +0.8
5,022 + -0.1
5,022 + -0.3
5,023 - -0.0
5,089 + -2.0
5,109 + +0.0

Or see this region's nucleotide sequence