Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04050

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04049 and H281DRAFT_04050 are separated by 58 nucleotidesH281DRAFT_04050 and H281DRAFT_04051 overlap by 4 nucleotides H281DRAFT_04049: H281DRAFT_04049 - glutathione transport system ATP-binding protein, at 149,383 to 151,305 _04049 H281DRAFT_04050: H281DRAFT_04050 - beta-aspartyl-peptidase (threonine type), at 151,364 to 152,359 _04050 H281DRAFT_04051: H281DRAFT_04051 - transcriptional regulator, RpiR family, at 152,356 to 153,294 _04051 Position (kb) 151 152 153Strain fitness (log2 ratio) -1 0 1at 150.489 kb on + strandat 150.490 kb on - strand, within H281DRAFT_04049at 150.492 kb on - strand, within H281DRAFT_04049at 150.555 kb on - strand, within H281DRAFT_04049at 151.272 kb on + strandat 151.575 kb on + strand, within H281DRAFT_04050at 152.634 kb on - strand, within H281DRAFT_04051at 152.748 kb on - strand, within H281DRAFT_04051at 152.859 kb on - strand, within H281DRAFT_04051at 153.254 kb on + strandat 153.264 kb on + strandat 153.288 kb on + strandat 153.288 kb on + strandat 153.289 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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150,489 + +1.7
150,490 - H281DRAFT_04049 0.58 -0.1
150,492 - H281DRAFT_04049 0.58 +0.0
150,555 - H281DRAFT_04049 0.61 -0.3
151,272 + -0.0
151,575 + H281DRAFT_04050 0.21 +0.3
152,634 - H281DRAFT_04051 0.30 -0.3
152,748 - H281DRAFT_04051 0.42 -0.6
152,859 - H281DRAFT_04051 0.54 -0.9
153,254 + +0.3
153,264 + -0.4
153,288 + +0.5
153,288 + -0.4
153,289 - +0.2

Or see this region's nucleotide sequence