Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03965

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03964 and H281DRAFT_03965 are separated by 81 nucleotidesH281DRAFT_03965 and H281DRAFT_03966 are separated by 120 nucleotides H281DRAFT_03964: H281DRAFT_03964 - adenosine deaminase, at 69,942 to 70,988 _03964 H281DRAFT_03965: H281DRAFT_03965 - guanine deaminase, at 71,070 to 72,434 _03965 H281DRAFT_03966: H281DRAFT_03966 - Dehydrogenase (flavoprotein), at 72,555 to 73,868 _03966 Position (kb) 71 72 73Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 70.111 kb on - strand, within H281DRAFT_03964at 70.111 kb on - strand, within H281DRAFT_03964at 70.111 kb on - strand, within H281DRAFT_03964at 70.146 kb on + strand, within H281DRAFT_03964at 70.146 kb on + strand, within H281DRAFT_03964at 70.146 kb on + strand, within H281DRAFT_03964at 70.147 kb on - strand, within H281DRAFT_03964at 70.147 kb on - strand, within H281DRAFT_03964at 70.149 kb on + strand, within H281DRAFT_03964at 70.188 kb on + strand, within H281DRAFT_03964at 70.189 kb on - strand, within H281DRAFT_03964at 70.189 kb on - strand, within H281DRAFT_03964at 70.206 kb on + strand, within H281DRAFT_03964at 70.207 kb on - strand, within H281DRAFT_03964at 70.207 kb on - strand, within H281DRAFT_03964at 70.207 kb on - strand, within H281DRAFT_03964at 70.441 kb on - strand, within H281DRAFT_03964at 70.581 kb on + strand, within H281DRAFT_03964at 70.582 kb on - strand, within H281DRAFT_03964at 70.587 kb on + strand, within H281DRAFT_03964at 70.587 kb on + strandat 70.587 kb on + strand, within H281DRAFT_03964at 70.821 kb on + strand, within H281DRAFT_03964at 70.837 kb on - strand, within H281DRAFT_03964at 70.837 kb on - strand, within H281DRAFT_03964at 70.837 kb on - strand, within H281DRAFT_03964at 70.999 kb on + strandat 70.999 kb on + strandat 71.385 kb on + strand, within H281DRAFT_03965at 71.386 kb on - strand, within H281DRAFT_03965at 71.424 kb on + strand, within H281DRAFT_03965at 71.425 kb on - strand, within H281DRAFT_03965at 71.493 kb on + strand, within H281DRAFT_03965at 71.493 kb on + strand, within H281DRAFT_03965at 71.682 kb on + strand, within H281DRAFT_03965at 71.844 kb on + strand, within H281DRAFT_03965at 71.845 kb on - strand, within H281DRAFT_03965at 71.857 kb on - strand, within H281DRAFT_03965at 71.866 kb on - strand, within H281DRAFT_03965at 71.866 kb on - strand, within H281DRAFT_03965at 72.026 kb on + strand, within H281DRAFT_03965at 72.026 kb on + strand, within H281DRAFT_03965at 72.027 kb on - strand, within H281DRAFT_03965at 72.153 kb on + strand, within H281DRAFT_03965at 72.154 kb on - strand, within H281DRAFT_03965at 72.357 kb on + strandat 72.473 kb on + strandat 72.474 kb on - strandat 72.474 kb on - strandat 72.478 kb on - strandat 72.478 kb on - strandat 72.525 kb on - strandat 72.525 kb on - strandat 72.613 kb on + strandat 72.614 kb on - strandat 72.692 kb on - strand, within H281DRAFT_03966at 72.721 kb on + strand, within H281DRAFT_03966at 72.722 kb on - strand, within H281DRAFT_03966at 73.217 kb on - strand, within H281DRAFT_03966at 73.217 kb on - strand, within H281DRAFT_03966at 73.217 kb on - strand, within H281DRAFT_03966at 73.314 kb on + strand, within H281DRAFT_03966at 73.314 kb on + strand, within H281DRAFT_03966at 73.415 kb on + strand, within H281DRAFT_03966at 73.415 kb on + strand, within H281DRAFT_03966at 73.416 kb on - strand, within H281DRAFT_03966

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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70,111 - H281DRAFT_03964 0.16 +0.2
70,111 - H281DRAFT_03964 0.16 +0.4
70,111 - H281DRAFT_03964 0.16 -0.1
70,146 + H281DRAFT_03964 0.19 -0.2
70,146 + H281DRAFT_03964 0.19 -0.6
70,146 + H281DRAFT_03964 0.19 -0.3
70,147 - H281DRAFT_03964 0.20 +1.0
70,147 - H281DRAFT_03964 0.20 -0.4
70,149 + H281DRAFT_03964 0.20 +0.7
70,188 + H281DRAFT_03964 0.23 +1.2
70,189 - H281DRAFT_03964 0.24 +0.5
70,189 - H281DRAFT_03964 0.24 +0.5
70,206 + H281DRAFT_03964 0.25 +0.8
70,207 - H281DRAFT_03964 0.25 +1.0
70,207 - H281DRAFT_03964 0.25 -0.0
70,207 - H281DRAFT_03964 0.25 +0.2
70,441 - H281DRAFT_03964 0.48 +0.1
70,581 + H281DRAFT_03964 0.61 +0.7
70,582 - H281DRAFT_03964 0.61 +0.0
70,587 + H281DRAFT_03964 0.62 -0.2
70,587 + +0.1
70,587 + H281DRAFT_03964 0.62 +0.7
70,821 + H281DRAFT_03964 0.84 +0.8
70,837 - H281DRAFT_03964 0.85 +0.5
70,837 - H281DRAFT_03964 0.85 -0.0
70,837 - H281DRAFT_03964 0.85 +0.7
70,999 + +0.4
70,999 + +0.4
71,385 + H281DRAFT_03965 0.23 -1.1
71,386 - H281DRAFT_03965 0.23 +0.3
71,424 + H281DRAFT_03965 0.26 +1.7
71,425 - H281DRAFT_03965 0.26 +0.0
71,493 + H281DRAFT_03965 0.31 -0.2
71,493 + H281DRAFT_03965 0.31 -0.5
71,682 + H281DRAFT_03965 0.45 -0.1
71,844 + H281DRAFT_03965 0.57 +0.8
71,845 - H281DRAFT_03965 0.57 -0.4
71,857 - H281DRAFT_03965 0.58 +0.1
71,866 - H281DRAFT_03965 0.58 -1.8
71,866 - H281DRAFT_03965 0.58 -0.4
72,026 + H281DRAFT_03965 0.70 +0.3
72,026 + H281DRAFT_03965 0.70 +0.1
72,027 - H281DRAFT_03965 0.70 +1.2
72,153 + H281DRAFT_03965 0.79 +0.1
72,154 - H281DRAFT_03965 0.79 -0.7
72,357 + +0.3
72,473 + -3.0
72,474 - -0.1
72,474 - +0.5
72,478 - -0.2
72,478 - +1.8
72,525 - +1.1
72,525 - +0.4
72,613 + +0.2
72,614 - -0.3
72,692 - H281DRAFT_03966 0.10 +0.3
72,721 + H281DRAFT_03966 0.13 +0.1
72,722 - H281DRAFT_03966 0.13 +0.3
73,217 - H281DRAFT_03966 0.50 -1.2
73,217 - H281DRAFT_03966 0.50 +1.2
73,217 - H281DRAFT_03966 0.50 +0.0
73,314 + H281DRAFT_03966 0.58 -0.2
73,314 + H281DRAFT_03966 0.58 +0.3
73,415 + H281DRAFT_03966 0.65 -1.0
73,415 + H281DRAFT_03966 0.65 -1.0
73,416 - H281DRAFT_03966 0.66 -0.4

Or see this region's nucleotide sequence